Cluster: Rep_108_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_108
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_108_c_14 | Rep_108_c_14_25 | 22586 | 26077 | + | 1.B.14.6.1 |
| pfam | Rep_108_c_14 | Rep_108_c_14_26 | 26084 | 27628 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | Rep_108_c_14 | Rep_108_c_14_27 | 27673 | 29598 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_108_c_14 | Rep_108_c_14_28 | 29670 | 30791 | + | GH16_3 |
| CAZyme | Rep_108_c_14 | Rep_108_c_14_29 | 30794 | 32062 | + | GH5_46 |
| CAZyme | Rep_108_c_14 | Rep_108_c_14_30 | 32076 | 34412 | + | GH3 |
Gene ID: Rep_108_c_14_25
Type: TC
Location: 22586 - 26077 (+)
Type: TC
Location: 22586 - 26077 (+)
Gene ID: Rep_108_c_14_26
Type: pfam
Location: 26084 - 27628 (+)
Type: pfam
Location: 26084 - 27628 (+)
Gene ID: Rep_108_c_14_27
Type:
Location: 27673 - 29598 (+)
Type:
Location: 27673 - 29598 (+)
Gene ID: Rep_108_c_14_28
Type: CAZyme
Location: 29670 - 30791 (+)
Type: CAZyme
Location: 29670 - 30791 (+)
Gene ID: Rep_108_c_14_29
Type: CAZyme
Location: 30794 - 32062 (+)
Type: CAZyme
Location: 30794 - 32062 (+)
Gene ID: Rep_108_c_14_30
Type: CAZyme
Location: 32076 - 34412 (+)
Type: CAZyme
Location: 32076 - 34412 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A bennonis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.