Genome Details
Selected Rep_genome_ID: Rep_1021
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus johnsonii
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG044_bin.44 | 1,845,293 | 92.44% | 0% | NA | Africa | H3AfricaPhase2 |
| CGMR003926 | 1,945,645 | 99.22% | 0% | China | Asia | CGMR |
| Rep_1021 | 1,699,773 | 99.2248% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_1021_CGC16 | CGCFAM_00002 | Yes | 12 | 7 | |
| Rep_1021_CGC17 | CGCFAM_00336 | Yes | 7 | 2 | alpha-glucan |
| Rep_1021_CGC7 | CGCFAM_00403 | Yes | 13 | 3 | |
| Rep_1021_CGC14 | CGCFAM_01025 | Yes | 14 | 5 | |
| Rep_1021_CGC4 | CGCFAM_03336 | Yes | 15 | 2 | |
| Rep_1021_CGC12 | CGCFAM_04239 | Yes | 7 | 2 | |
| Rep_1021_CGC6 | CGCFAM_04770 | Yes | 8 | 1 | |
| Rep_1021_CGC11 | CGCFAM_04773 | Yes | 8 | 1 | |
| Rep_1021_CGC9 | CGCFAM_04775 | Yes | 7 | 1 | |
| Rep_1021_CGC13 | CGCFAM_04777 | Yes | 23 | 2 |
Top CAZyme Families