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Cluster: Rep_1021_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1021_c_10 Rep_1021_c_10_20 9531 11459 - 4.A.1.2.2
TF Rep_1021_c_10 Rep_1021_c_10_21 11653 12378 + GntR
CAZyme Rep_1021_c_10 Rep_1021_c_10_22 12394 14052 + GH13_29
NULL(UNKNOWN) Rep_1021_c_10 Rep_1021_c_10_23 14112 14501 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1021_c_10 Rep_1021_c_10_24 14685 15335 - 3.A.1.3.10
TC Rep_1021_c_10 Rep_1021_c_10_25 15349 15987 - 3.A.1.3.25
TC Rep_1021_c_10 Rep_1021_c_10_26 15984 16808 - 3.A.1.3.16
TC Rep_1021_c_10 Rep_1021_c_10_27 16823 17560 - 3.A.1.3.26
TC Rep_1021_c_10 Rep_1021_c_10_28 18003 18824 - 3.A.1.3.16
TC Rep_1021_c_10 Rep_1021_c_10_29 18878 20647 - 3.A.1.135.8
TC Rep_1021_c_10 Rep_1021_c_10_30 20640 22373 - 3.A.1.135.3
TF Rep_1021_c_10 Rep_1021_c_10_31 22377 22814 - 0040517
pfam Rep_1021_c_10 Rep_1021_c_10_32 22900 23700 - DUF915
TC Rep_1021_c_10 Rep_1021_c_10_33 23853 25091 - 2.A.1.15.9
peptidase Rep_1021_c_10 Rep_1021_c_10_34 25227 26324 - C69.001
peptidase Rep_1021_c_10 Rep_1021_c_10_35 26290 26550 - C69.001
TC Rep_1021_c_10 Rep_1021_c_10_36 26749 28242 - 2.A.17.1.6
pfam Rep_1021_c_10 Rep_1021_c_10_37 28478 29029 - Glyco_hydro_42M
CAZyme Rep_1021_c_10 Rep_1021_c_10_38 29036 30421 - GH42
pfam Rep_1021_c_10 Rep_1021_c_10_39 30750 31409 + PSDC
pfam Rep_1021_c_10 Rep_1021_c_10_40 31366 31959 + PS_Dcarbxylase
TC Rep_1021_c_10 Rep_1021_c_10_41 32029 32790 - 3.A.1.139.2
TC Rep_1021_c_10 Rep_1021_c_10_42 32768 33421 - 3.A.1.139.2
Gene ID: Rep_1021_c_10_20
Type: TC
Location: 9531 - 11459 (-)
Gene ID: Rep_1021_c_10_21
Type: TF
Location: 11653 - 12378 (+)
Gene ID: Rep_1021_c_10_22
Type: CAZyme
Location: 12394 - 14052 (+)
Gene ID: Rep_1021_c_10_23
Type:
Location: 14112 - 14501 (-)
Gene ID: Rep_1021_c_10_24
Type: TC
Location: 14685 - 15335 (-)
Gene ID: Rep_1021_c_10_25
Type: TC
Location: 15349 - 15987 (-)
Gene ID: Rep_1021_c_10_26
Type: TC
Location: 15984 - 16808 (-)
Gene ID: Rep_1021_c_10_27
Type: TC
Location: 16823 - 17560 (-)
Gene ID: Rep_1021_c_10_28
Type: TC
Location: 18003 - 18824 (-)
Gene ID: Rep_1021_c_10_29
Type: TC
Location: 18878 - 20647 (-)
Gene ID: Rep_1021_c_10_30
Type: TC
Location: 20640 - 22373 (-)
Gene ID: Rep_1021_c_10_31
Type: TF
Location: 22377 - 22814 (-)
Gene ID: Rep_1021_c_10_32
Type: pfam
Location: 22900 - 23700 (-)
Gene ID: Rep_1021_c_10_33
Type: TC
Location: 23853 - 25091 (-)
Gene ID: Rep_1021_c_10_34
Type: peptidase
Location: 25227 - 26324 (-)
Gene ID: Rep_1021_c_10_35
Type: peptidase
Location: 26290 - 26550 (-)
Gene ID: Rep_1021_c_10_36
Type: TC
Location: 26749 - 28242 (-)
Gene ID: Rep_1021_c_10_37
Type: pfam
Location: 28478 - 29029 (-)
Gene ID: Rep_1021_c_10_38
Type: CAZyme
Location: 29036 - 30421 (-)
Gene ID: Rep_1021_c_10_39
Type: pfam
Location: 30750 - 31409 (+)
Gene ID: Rep_1021_c_10_40
Type: pfam
Location: 31366 - 31959 (+)
Gene ID: Rep_1021_c_10_41
Type: TC
Location: 32029 - 32790 (-)
Gene ID: Rep_1021_c_10_42
Type: TC
Location: 32768 - 33421 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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