Cluster: Rep_1021_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: Rep_1021
- CGC Family ID: CGCFAM_00336
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1021_c_16 | Rep_1021_c_16_14 | 12910 | 14526 | - | GH13_31 |
| TC | Rep_1021_c_16 | Rep_1021_c_16_15 | 14600 | 15457 | - | 3.A.1.1.27 |
| TC | Rep_1021_c_16 | Rep_1021_c_16_16 | 15460 | 16815 | - | 3.A.1.1.27 |
| TC | Rep_1021_c_16 | Rep_1021_c_16_17 | 16851 | 18068 | - | 3.A.1.1.27 |
| TC | Rep_1021_c_16 | Rep_1021_c_16_18 | 18178 | 19281 | - | 3.A.1.1.20 |
| pfam | Rep_1021_c_16 | Rep_1021_c_16_19 | 19301 | 19963 | - | Hydrolase | HAD_2 |
| CAZyme | Rep_1021_c_16 | Rep_1021_c_16_20 | 19948 | 22218 | - | GH65 |
Gene ID: Rep_1021_c_16_14
Type: CAZyme
Location: 12910 - 14526 (-)
Type: CAZyme
Location: 12910 - 14526 (-)
Gene ID: Rep_1021_c_16_15
Type: TC
Location: 14600 - 15457 (-)
Type: TC
Location: 14600 - 15457 (-)
Gene ID: Rep_1021_c_16_16
Type: TC
Location: 15460 - 16815 (-)
Type: TC
Location: 15460 - 16815 (-)
Gene ID: Rep_1021_c_16_17
Type: TC
Location: 16851 - 18068 (-)
Type: TC
Location: 16851 - 18068 (-)
Gene ID: Rep_1021_c_16_18
Type: TC
Location: 18178 - 19281 (-)
Type: TC
Location: 18178 - 19281 (-)
Gene ID: Rep_1021_c_16_19
Type: pfam
Location: 19301 - 19963 (-)
Type: pfam
Location: 19301 - 19963 (-)
Gene ID: Rep_1021_c_16_20
Type: CAZyme
Location: 19948 - 22218 (-)
Type: CAZyme
Location: 19948 - 22218 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus johnsonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.