Cluster: Rep_1021_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_1021
- CGC Family ID: CGCFAM_00403
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1021_c_1 | Rep_1021_c_1_164 | 168178 | 169626 | - | GH1 |
| NULL(UNKNOWN) | Rep_1021_c_1 | Rep_1021_c_1_165 | 169825 | 170322 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1021_c_1 | Rep_1021_c_1_166 | 170345 | 171697 | + | 4.A.3.2.2 |
| TF | Rep_1021_c_1 | Rep_1021_c_1_167 | 171773 | 172471 | + | GntR |
| pfam | Rep_1021_c_1 | Rep_1021_c_1_168 | 172522 | 172929 | - | DUF3284 |
| CAZyme | Rep_1021_c_1 | Rep_1021_c_1_169 | 173001 | 174494 | - | GH1 |
| TF | Rep_1021_c_1 | Rep_1021_c_1_170 | 174560 | 175285 | - | GntR |
| TC | Rep_1021_c_1 | Rep_1021_c_1_171 | 175285 | 175611 | - | 4.A.3.2.4 |
| NULL(UNKNOWN) | Rep_1021_c_1 | Rep_1021_c_1_172 | 175728 | 175949 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1021_c_1 | Rep_1021_c_1_173 | 175954 | 176277 | - | 4.A.3.2.4 |
| TC | Rep_1021_c_1 | Rep_1021_c_1_174 | 176424 | 177416 | - | 4.A.3.2.1 |
| NULL(UNKNOWN) | Rep_1021_c_1 | Rep_1021_c_1_175 | 177613 | 177774 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1021_c_1 | Rep_1021_c_1_176 | 177774 | 179153 | - | GH1 |
Gene ID: Rep_1021_c_1_164
Type: CAZyme
Location: 168178 - 169626 (-)
Type: CAZyme
Location: 168178 - 169626 (-)
Gene ID: Rep_1021_c_1_165
Type:
Location: 169825 - 170322 (+)
Type:
Location: 169825 - 170322 (+)
Gene ID: Rep_1021_c_1_166
Type: TC
Location: 170345 - 171697 (+)
Type: TC
Location: 170345 - 171697 (+)
Gene ID: Rep_1021_c_1_167
Type: TF
Location: 171773 - 172471 (+)
Type: TF
Location: 171773 - 172471 (+)
Gene ID: Rep_1021_c_1_168
Type: pfam
Location: 172522 - 172929 (-)
Type: pfam
Location: 172522 - 172929 (-)
Gene ID: Rep_1021_c_1_169
Type: CAZyme
Location: 173001 - 174494 (-)
Type: CAZyme
Location: 173001 - 174494 (-)
Gene ID: Rep_1021_c_1_170
Type: TF
Location: 174560 - 175285 (-)
Type: TF
Location: 174560 - 175285 (-)
Gene ID: Rep_1021_c_1_171
Type: TC
Location: 175285 - 175611 (-)
Type: TC
Location: 175285 - 175611 (-)
Gene ID: Rep_1021_c_1_172
Type:
Location: 175728 - 175949 (-)
Type:
Location: 175728 - 175949 (-)
Gene ID: Rep_1021_c_1_173
Type: TC
Location: 175954 - 176277 (-)
Type: TC
Location: 175954 - 176277 (-)
Gene ID: Rep_1021_c_1_174
Type: TC
Location: 176424 - 177416 (-)
Type: TC
Location: 176424 - 177416 (-)
Gene ID: Rep_1021_c_1_175
Type:
Location: 177613 - 177774 (-)
Type:
Location: 177613 - 177774 (-)
Gene ID: Rep_1021_c_1_176
Type: CAZyme
Location: 177774 - 179153 (-)
Type: CAZyme
Location: 177774 - 179153 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus johnsonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.