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Cluster: Rep_1021_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1021_c_1 Rep_1021_c_1_146 150192 151124 + GT2
NULL(UNKNOWN) Rep_1021_c_1 Rep_1021_c_1_147 151184 151384 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1021_c_1 Rep_1021_c_1_148 151584 152606 - 2.A.1.3.30
NULL(UNKNOWN) Rep_1021_c_1 Rep_1021_c_1_149 152744 153457 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1021_c_1 Rep_1021_c_1_150 153529 154392 + 2.A.7.5.2
pfam Rep_1021_c_1 Rep_1021_c_1_151 154683 155564 + Aldose_epim
pfam Rep_1021_c_1 Rep_1021_c_1_152 155693 156802 + LytR_cpsA_psr
TC Rep_1021_c_1 Rep_1021_c_1_153 156802 157422 + 9.B.31.1.2
Gene ID: Rep_1021_c_1_146
Type: CAZyme
Location: 150192 - 151124 (+)
Gene ID: Rep_1021_c_1_147
Type:
Location: 151184 - 151384 (-)
Gene ID: Rep_1021_c_1_148
Type: TC
Location: 151584 - 152606 (-)
Gene ID: Rep_1021_c_1_149
Type:
Location: 152744 - 153457 (+)
Gene ID: Rep_1021_c_1_150
Type: TC
Location: 153529 - 154392 (+)
Gene ID: Rep_1021_c_1_151
Type: pfam
Location: 154683 - 155564 (+)
Gene ID: Rep_1021_c_1_152
Type: pfam
Location: 155693 - 156802 (+)
Gene ID: Rep_1021_c_1_153
Type: TC
Location: 156802 - 157422 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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