Cluster: Rep_1021_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1021
- CGC Family ID: CGCFAM_04239
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1021_c_7 | Rep_1021_c_7_74 | 67027 | 67791 | - | 3.A.1.34.1 |
| TC | Rep_1021_c_7 | Rep_1021_c_7_75 | 67784 | 68683 | - | 3.A.1.34.1 |
| pfam | Rep_1021_c_7 | Rep_1021_c_7_76 | 68680 | 69672 | - | ABC_sub_bind |
| STP | Rep_1021_c_7 | Rep_1021_c_7_77 | 69958 | 71193 | - | Aminotran_1_2 |
| CAZyme | Rep_1021_c_7 | Rep_1021_c_7_78 | 71341 | 72783 | - | GH13_18 |
| CAZyme | Rep_1021_c_7 | Rep_1021_c_7_79 | 72794 | 74992 | - | GH36 |
| TC | Rep_1021_c_7 | Rep_1021_c_7_80 | 74976 | 76937 | - | 2.A.2.2.2 |
Gene ID: Rep_1021_c_7_74
Type: TC
Location: 67027 - 67791 (-)
Type: TC
Location: 67027 - 67791 (-)
Gene ID: Rep_1021_c_7_75
Type: TC
Location: 67784 - 68683 (-)
Type: TC
Location: 67784 - 68683 (-)
Gene ID: Rep_1021_c_7_76
Type: pfam
Location: 68680 - 69672 (-)
Type: pfam
Location: 68680 - 69672 (-)
Gene ID: Rep_1021_c_7_77
Type: STP
Location: 69958 - 71193 (-)
Type: STP
Location: 69958 - 71193 (-)
Gene ID: Rep_1021_c_7_78
Type: CAZyme
Location: 71341 - 72783 (-)
Type: CAZyme
Location: 71341 - 72783 (-)
Gene ID: Rep_1021_c_7_79
Type: CAZyme
Location: 72794 - 74992 (-)
Type: CAZyme
Location: 72794 - 74992 (-)
Gene ID: Rep_1021_c_7_80
Type: TC
Location: 74976 - 76937 (-)
Type: TC
Location: 74976 - 76937 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus johnsonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.