Genome Details
Selected Rep_genome_ID: HRGMv2_2459
Total Genomes Found: 5
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus sp000187445
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR035860 | 2,003,797 | 98.88% | 0.09% | China | Asia | CGMR |
| HRGMv2_2459 | 2,064,156 | 99.87% | 0% | UK | Europe | HRGM |
| MGYG000001068 | 2,029,735 | 99.5% | 0.19% | Sweden | Europe | UHGG |
| REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_H_4_2261.8 | 2,047,849 | 98.88% | 0% | NA | Africa | Hadza |
| Rep_1118 | 2,063,815 | 98.3368% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2459_CGC13 | CGCFAM_00004 | Yes | 7 | 4 | alpha-glucan |
| HRGMv2_2459_CGC14 | CGCFAM_00055 | Yes | 7 | 4 | |
| HRGMv2_2459_CGC9 | CGCFAM_00067 | Yes | 8 | 3 | galactan |
| HRGMv2_2459_CGC18 | CGCFAM_00598 | Yes | 13 | 4 | |
| HRGMv2_2459_CGC10 | CGCFAM_01010 | Yes | 3 | 2 | |
| HRGMv2_2459_CGC19 | CGCFAM_02157 | Yes | 16 | 5 | |
| HRGMv2_2459_CGC4 | CGCFAM_02714 | Yes | 8 | 1 | |
| HRGMv2_2459_CGC12 | CGCFAM_04974 | Yes | 7 | 4 | |
| HRGMv2_2459_CGC6 | CGCFAM_05195 | Yes | 8 | 2 | |
| HRGMv2_2459_CGC26 | CGCFAM_05555 | Yes | 7 | 1 | |
| HRGMv2_2459_CGC15 | CGCFAM_06127 | Yes | 5 | 1 | |
| HRGMv2_2459_CGC17 | CGCFAM_06128 | Yes | 10 | 1 | |
| HRGMv2_2459_CGC22 | CGCFAM_06129 | Yes | 13 | 1 | |
| HRGMv2_2459_CGC7 | CGCFAM_06130 | Yes | 13 | 3 | |
| HRGMv2_2459_CGC21 | CGCFAM_10094 | Yes | 4 | 3 |
Top CAZyme Families