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Cluster: HRGMv2_2459_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2459_13 HRGMv2_2459_13_23 20335 22890 - 2.A.1.3.35
peptidase HRGMv2_2459_13 HRGMv2_2459_13_24 22887 23606 - S33.010
NULL(UNKNOWN) HRGMv2_2459_13 HRGMv2_2459_13_25 23956 24195 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2459_13 HRGMv2_2459_13_26 24266 24526 - 9.B.44.2.4
TC HRGMv2_2459_13 HRGMv2_2459_13_27 24616 26535 - 3.A.1.121.4
pfam HRGMv2_2459_13 HRGMv2_2459_13_28 26572 27207 - PRK
TC HRGMv2_2459_13 HRGMv2_2459_13_29 27299 28381 + 3.A.18.1.1
pfam HRGMv2_2459_13 HRGMv2_2459_13_30 28436 29599 - CPSase_L_D2 | ATP-grasp_4
peptidase HRGMv2_2459_13 HRGMv2_2459_13_31 29640 30380 - S09.UNW
CAZyme HRGMv2_2459_13 HRGMv2_2459_13_32 30431 31258 - CE1
TF HRGMv2_2459_13 HRGMv2_2459_13_33 31473 32729 + 0039939
pfam HRGMv2_2459_13 HRGMv2_2459_13_34 32793 34226 - Aldedh
TC HRGMv2_2459_13 HRGMv2_2459_13_35 34438 36171 - 8.A.7.1.1
Gene ID: HRGMv2_2459_13_23
Type: TC
Location: 20335 - 22890 (-)
Gene ID: HRGMv2_2459_13_24
Type: peptidase
Location: 22887 - 23606 (-)
Gene ID: HRGMv2_2459_13_25
Type:
Location: 23956 - 24195 (-)
Gene ID: HRGMv2_2459_13_26
Type: TC
Location: 24266 - 24526 (-)
Gene ID: HRGMv2_2459_13_27
Type: TC
Location: 24616 - 26535 (-)
Gene ID: HRGMv2_2459_13_28
Type: pfam
Location: 26572 - 27207 (-)
Gene ID: HRGMv2_2459_13_29
Type: TC
Location: 27299 - 28381 (+)
Gene ID: HRGMv2_2459_13_30
Type: pfam
Location: 28436 - 29599 (-)
Gene ID: HRGMv2_2459_13_31
Type: peptidase
Location: 29640 - 30380 (-)
Gene ID: HRGMv2_2459_13_32
Type: CAZyme
Location: 30431 - 31258 (-)
Gene ID: HRGMv2_2459_13_33
Type: TF
Location: 31473 - 32729 (+)
Gene ID: HRGMv2_2459_13_34
Type: pfam
Location: 32793 - 34226 (-)
Gene ID: HRGMv2_2459_13_35
Type: TC
Location: 34438 - 36171 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2459_13_32 vegan > omnivore 1.89065 0.01710
HRGMv2_2459_13_32 vegetarian > omnivore 3.04172 0.03320

🧭 Explore Read Mapping of CGC

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