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Cluster: HRGMv2_2459_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2459_3 HRGMv2_2459_3_120 131201 132436 + 1.A.11.1.5
pfam HRGMv2_2459_3 HRGMv2_2459_3_121 132447 132788 + P-II
CAZyme HRGMv2_2459_3 HRGMv2_2459_3_122 132887 133543 + GH73
pfam HRGMv2_2459_3 HRGMv2_2459_3_123 133567 134388 + Hydrolase | S6PP | S6PP | Hydrolase_3
pfam HRGMv2_2459_3 HRGMv2_2459_3_124 134407 134913 - Imp-YgjV
TC HRGMv2_2459_3 HRGMv2_2459_3_125 135361 136992 + 2.A.58.2.2
CAZyme HRGMv2_2459_3 HRGMv2_2459_3_126 137079 138227 + CE9
TC HRGMv2_2459_3 HRGMv2_2459_3_127 138339 139580 + 2.A.120.1.1
Gene ID: HRGMv2_2459_3_120
Type: TC
Location: 131201 - 132436 (+)
Gene ID: HRGMv2_2459_3_121
Type: pfam
Location: 132447 - 132788 (+)
Gene ID: HRGMv2_2459_3_122
Type: CAZyme
Location: 132887 - 133543 (+)
Gene ID: HRGMv2_2459_3_123
Type: pfam
Location: 133567 - 134388 (+)
Gene ID: HRGMv2_2459_3_124
Type: pfam
Location: 134407 - 134913 (-)
Gene ID: HRGMv2_2459_3_125
Type: TC
Location: 135361 - 136992 (+)
Gene ID: HRGMv2_2459_3_126
Type: CAZyme
Location: 137079 - 138227 (+)
Gene ID: HRGMv2_2459_3_127
Type: TC
Location: 138339 - 139580 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2459_3_125 vegan > omnivore 1.22292 0.01710
HRGMv2_2459_3_125 vegetarian > omnivore 1.80933 0.00749

🧭 Explore Read Mapping of CGC

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