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Cluster: HRGMv2_2459_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2459_2 HRGMv2_2459_2_140 144099 146735 + 3.A.3.2.22
pfam HRGMv2_2459_2 HRGMv2_2459_2_141 147100 148368 - DltD
pfam HRGMv2_2459_2 HRGMv2_2459_2_142 148361 148600 - PP-binding
TC HRGMv2_2459_2 HRGMv2_2459_2_143 148618 149865 - 2.A.50.2.1
TC HRGMv2_2459_2 HRGMv2_2459_2_144 149862 151412 - 4.C.1.1.7
TC HRGMv2_2459_2 HRGMv2_2459_2_145 151721 153469 - 3.A.1.135.9
TC HRGMv2_2459_2 HRGMv2_2459_2_146 153453 155198 - 3.A.1.135.5
CAZyme HRGMv2_2459_2 HRGMv2_2459_2_147 155230 155817 - GH23
Gene ID: HRGMv2_2459_2_140
Type: TC
Location: 144099 - 146735 (+)
Gene ID: HRGMv2_2459_2_141
Type: pfam
Location: 147100 - 148368 (-)
Gene ID: HRGMv2_2459_2_142
Type: pfam
Location: 148361 - 148600 (-)
Gene ID: HRGMv2_2459_2_143
Type: TC
Location: 148618 - 149865 (-)
Gene ID: HRGMv2_2459_2_144
Type: TC
Location: 149862 - 151412 (-)
Gene ID: HRGMv2_2459_2_145
Type: TC
Location: 151721 - 153469 (-)
Gene ID: HRGMv2_2459_2_146
Type: TC
Location: 153453 - 155198 (-)
Gene ID: HRGMv2_2459_2_147
Type: CAZyme
Location: 155230 - 155817 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2459_2_142 vegan > omnivore 1.37027 0.01710

🧭 Explore Read Mapping of CGC

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