Cluster: HRGMv2_2459_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2459
- CGC Family ID: CGCFAM_06130
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2459_4 | HRGMv2_2459_4_42 | 46540 | 47814 | - | GT1 |
| pfam | HRGMv2_2459_4 | HRGMv2_2459_4_43 | 48076 | 48852 | + | adh_short | Epimerase | Polysacc_synt_2 | Sacchrp_dh_NADP | KR | adh_short_C2 |
| CAZyme | HRGMv2_2459_4 | HRGMv2_2459_4_44 | 48849 | 49637 | + | GT21 |
| NULL(UNKNOWN) | HRGMv2_2459_4 | HRGMv2_2459_4_45 | 49634 | 49990 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2459_4 | HRGMv2_2459_4_46 | 49983 | 50561 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2459_4 | HRGMv2_2459_4_47 | 50597 | 51880 | + | GT1 |
| NULL(UNKNOWN) | HRGMv2_2459_4 | HRGMv2_2459_4_48 | 51972 | 52457 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2459_4 | HRGMv2_2459_4_49 | 52461 | 53816 | - | DnaJ |
| TC | HRGMv2_2459_4 | HRGMv2_2459_4_50 | 53827 | 55596 | - | 1.A.33.1.4 |
| TC | HRGMv2_2459_4 | HRGMv2_2459_4_51 | 55945 | 56883 | - | 2.A.28.2.6 |
| pfam | HRGMv2_2459_4 | HRGMv2_2459_4_52 | 57025 | 57474 | - | dCMP_cyt_deam_1 |
| TC | HRGMv2_2459_4 | HRGMv2_2459_4_53 | 57485 | 58222 | - | 3.A.1.142.1 |
| TC | HRGMv2_2459_4 | HRGMv2_2459_4_54 | 58219 | 59100 | - | 3.A.1.142.1 |
Gene ID: HRGMv2_2459_4_42
Type: CAZyme
Location: 46540 - 47814 (-)
Type: CAZyme
Location: 46540 - 47814 (-)
Gene ID: HRGMv2_2459_4_43
Type: pfam
Location: 48076 - 48852 (+)
Type: pfam
Location: 48076 - 48852 (+)
Gene ID: HRGMv2_2459_4_44
Type: CAZyme
Location: 48849 - 49637 (+)
Type: CAZyme
Location: 48849 - 49637 (+)
Gene ID: HRGMv2_2459_4_45
Type:
Location: 49634 - 49990 (+)
Type:
Location: 49634 - 49990 (+)
Gene ID: HRGMv2_2459_4_46
Type:
Location: 49983 - 50561 (+)
Type:
Location: 49983 - 50561 (+)
Gene ID: HRGMv2_2459_4_47
Type: CAZyme
Location: 50597 - 51880 (+)
Type: CAZyme
Location: 50597 - 51880 (+)
Gene ID: HRGMv2_2459_4_48
Type:
Location: 51972 - 52457 (-)
Type:
Location: 51972 - 52457 (-)
Gene ID: HRGMv2_2459_4_49
Type: pfam
Location: 52461 - 53816 (-)
Type: pfam
Location: 52461 - 53816 (-)
Gene ID: HRGMv2_2459_4_50
Type: TC
Location: 53827 - 55596 (-)
Type: TC
Location: 53827 - 55596 (-)
Gene ID: HRGMv2_2459_4_51
Type: TC
Location: 55945 - 56883 (-)
Type: TC
Location: 55945 - 56883 (-)
Gene ID: HRGMv2_2459_4_52
Type: pfam
Location: 57025 - 57474 (-)
Type: pfam
Location: 57025 - 57474 (-)
Gene ID: HRGMv2_2459_4_53
Type: TC
Location: 57485 - 58222 (-)
Type: TC
Location: 57485 - 58222 (-)
Gene ID: HRGMv2_2459_4_54
Type: TC
Location: 58219 - 59100 (-)
Type: TC
Location: 58219 - 59100 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus sp000187445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.