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Cluster: HRGMv2_2459_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2459_11 HRGMv2_2459_11_45 54212 57781 + GH25
pfam HRGMv2_2459_11 HRGMv2_2459_11_46 58078 60708 + Amidase_3 | GBS_Bsp-like | GBS_Bsp-like | GBS_Bsp-like | GBS_Bsp-like | GBS_Bsp-like
CAZyme HRGMv2_2459_11 HRGMv2_2459_11_47 60828 61682 + CBM41
CAZyme HRGMv2_2459_11 HRGMv2_2459_11_48 61782 64541 + GH13_12
TC HRGMv2_2459_11 HRGMv2_2459_11_49 64793 65665 + 2.A.108.2.3
TC HRGMv2_2459_11 HRGMv2_2459_11_50 65671 66876 + 2.A.108.2.3
TC HRGMv2_2459_11 HRGMv2_2459_11_51 66854 68539 + 2.A.108.2.5
TC HRGMv2_2459_11 HRGMv2_2459_11_52 68547 69254 + 2.A.64.3.1
pfam HRGMv2_2459_11 HRGMv2_2459_11_53 69267 69455 + TatA_B_E
TC HRGMv2_2459_11 HRGMv2_2459_11_54 69856 70992 - 3.A.1.1.28
TC HRGMv2_2459_11 HRGMv2_2459_11_55 71008 71844 - 3.A.1.1.27
TC HRGMv2_2459_11 HRGMv2_2459_11_56 71844 73202 - 3.A.1.1.27
TC HRGMv2_2459_11 HRGMv2_2459_11_57 73316 74563 - 3.A.1.1.27
TF HRGMv2_2459_11 HRGMv2_2459_11_58 74782 75783 + LacI
CAZyme HRGMv2_2459_11 HRGMv2_2459_11_59 76033 77532 + GH77
CAZyme HRGMv2_2459_11 HRGMv2_2459_11_60 77534 79795 + GT35
Gene ID: HRGMv2_2459_11_45
Type: CAZyme
Location: 54212 - 57781 (+)
Gene ID: HRGMv2_2459_11_46
Type: pfam
Location: 58078 - 60708 (+)
Gene ID: HRGMv2_2459_11_47
Type: CAZyme
Location: 60828 - 61682 (+)
Gene ID: HRGMv2_2459_11_48
Type: CAZyme
Location: 61782 - 64541 (+)
Gene ID: HRGMv2_2459_11_49
Type: TC
Location: 64793 - 65665 (+)
Gene ID: HRGMv2_2459_11_50
Type: TC
Location: 65671 - 66876 (+)
Gene ID: HRGMv2_2459_11_51
Type: TC
Location: 66854 - 68539 (+)
Gene ID: HRGMv2_2459_11_52
Type: TC
Location: 68547 - 69254 (+)
Gene ID: HRGMv2_2459_11_53
Type: pfam
Location: 69267 - 69455 (+)
Gene ID: HRGMv2_2459_11_54
Type: TC
Location: 69856 - 70992 (-)
Gene ID: HRGMv2_2459_11_55
Type: TC
Location: 71008 - 71844 (-)
Gene ID: HRGMv2_2459_11_56
Type: TC
Location: 71844 - 73202 (-)
Gene ID: HRGMv2_2459_11_57
Type: TC
Location: 73316 - 74563 (-)
Gene ID: HRGMv2_2459_11_58
Type: TF
Location: 74782 - 75783 (+)
Gene ID: HRGMv2_2459_11_59
Type: CAZyme
Location: 76033 - 77532 (+)
Gene ID: HRGMv2_2459_11_60
Type: CAZyme
Location: 77534 - 79795 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2459_11_50 vegan > omnivore 1.32179 0.01710
HRGMv2_2459_11_50 vegetarian > omnivore 2.28239 0.00749
HRGMv2_2459_11_57 vegan > omnivore 1.12066 0.01710

🧭 Explore Read Mapping of CGC

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