Cluster: HRGMv2_2459_CGC18
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2459
- CGC Family ID: CGCFAM_00598
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2459_11 | HRGMv2_2459_11_15 | 19306 | 19998 | + | 8.A.3.2.3 |
| TC | HRGMv2_2459_11 | HRGMv2_2459_11_16 | 20008 | 20748 | + | 8.A.3.2.3 |
| TC | HRGMv2_2459_11 | HRGMv2_2459_11_17 | 20805 | 22172 | + | 9.B.18.1.2 |
| CAZyme | HRGMv2_2459_11 | HRGMv2_2459_11_18 | 22205 | 23377 | + | GT4 |
| CAZyme | HRGMv2_2459_11 | HRGMv2_2459_11_19 | 23380 | 24528 | + | GT4 |
| pfam | HRGMv2_2459_11 | HRGMv2_2459_11_20 | 24530 | 25171 | + | DUF1919 |
| pfam | HRGMv2_2459_11 | HRGMv2_2459_11_21 | 25168 | 26133 | + | DUF6625 |
| CAZyme | HRGMv2_2459_11 | HRGMv2_2459_11_22 | 26133 | 27203 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_2459_11 | HRGMv2_2459_11_23 | 27237 | 28397 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2459_11 | HRGMv2_2459_11_24 | 28398 | 29813 | + | 2.A.66.2.16 |
| STP | HRGMv2_2459_11 | HRGMv2_2459_11_25 | 29824 | 30924 | + | Pyr_redox |
| pfam | HRGMv2_2459_11 | HRGMv2_2459_11_26 | 30921 | 31913 | + | Stealth_CR2 | Stealth_CR1 |
| CAZyme | HRGMv2_2459_11 | HRGMv2_2459_11_27 | 31924 | 32976 | + | GT113 |
Gene ID: HRGMv2_2459_11_15
Type: TC
Location: 19306 - 19998 (+)
Type: TC
Location: 19306 - 19998 (+)
Gene ID: HRGMv2_2459_11_16
Type: TC
Location: 20008 - 20748 (+)
Type: TC
Location: 20008 - 20748 (+)
Gene ID: HRGMv2_2459_11_17
Type: TC
Location: 20805 - 22172 (+)
Type: TC
Location: 20805 - 22172 (+)
Gene ID: HRGMv2_2459_11_18
Type: CAZyme
Location: 22205 - 23377 (+)
Type: CAZyme
Location: 22205 - 23377 (+)
Gene ID: HRGMv2_2459_11_19
Type: CAZyme
Location: 23380 - 24528 (+)
Type: CAZyme
Location: 23380 - 24528 (+)
Gene ID: HRGMv2_2459_11_20
Type: pfam
Location: 24530 - 25171 (+)
Type: pfam
Location: 24530 - 25171 (+)
Gene ID: HRGMv2_2459_11_21
Type: pfam
Location: 25168 - 26133 (+)
Type: pfam
Location: 25168 - 26133 (+)
Gene ID: HRGMv2_2459_11_22
Type: CAZyme
Location: 26133 - 27203 (+)
Type: CAZyme
Location: 26133 - 27203 (+)
Gene ID: HRGMv2_2459_11_23
Type:
Location: 27237 - 28397 (+)
Type:
Location: 27237 - 28397 (+)
Gene ID: HRGMv2_2459_11_24
Type: TC
Location: 28398 - 29813 (+)
Type: TC
Location: 28398 - 29813 (+)
Gene ID: HRGMv2_2459_11_25
Type: STP
Location: 29824 - 30924 (+)
Type: STP
Location: 29824 - 30924 (+)
Gene ID: HRGMv2_2459_11_26
Type: pfam
Location: 30921 - 31913 (+)
Type: pfam
Location: 30921 - 31913 (+)
Gene ID: HRGMv2_2459_11_27
Type: CAZyme
Location: 31924 - 32976 (+)
Type: CAZyme
Location: 31924 - 32976 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus sp000187445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.