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Cluster: HRGMv2_2459_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2459_18 HRGMv2_2459_18_17 17036 18358 - CBM50
pfam HRGMv2_2459_18 HRGMv2_2459_18_18 18577 20067 + tRNA-synt_2 | tRNA_anti-codon | tRNA-synt_2d
NULL(UNKNOWN) HRGMv2_2459_18 HRGMv2_2459_18_19 20163 20666 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2459_18 HRGMv2_2459_18_20 21112 22446 + 2.A.55.2.6
pfam HRGMv2_2459_18 HRGMv2_2459_18_21 22486 22698 - PC4
NULL(UNKNOWN) HRGMv2_2459_18 HRGMv2_2459_18_22 22821 23105 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2459_18 HRGMv2_2459_18_23 23200 23739 + 3.A.1.25.5
Gene ID: HRGMv2_2459_18_17
Type: CAZyme
Location: 17036 - 18358 (-)
Gene ID: HRGMv2_2459_18_18
Type: pfam
Location: 18577 - 20067 (+)
Gene ID: HRGMv2_2459_18_19
Type:
Location: 20163 - 20666 (+)
Gene ID: HRGMv2_2459_18_20
Type: TC
Location: 21112 - 22446 (+)
Gene ID: HRGMv2_2459_18_21
Type: pfam
Location: 22486 - 22698 (-)
Gene ID: HRGMv2_2459_18_22
Type:
Location: 22821 - 23105 (+)
Gene ID: HRGMv2_2459_18_23
Type: TC
Location: 23200 - 23739 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2459_18_18 vegetarian > vegan 1.29323 0.04047

🧭 Explore Read Mapping of CGC

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