Genome Details
Selected Rep_genome_ID: HRGMv2_2399
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_B
Species
Roseburia_B zhanii
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR026145 | 2,551,386 | 96.6% | 2.89% | China | Asia | CGMR |
| HRGMv2_2399 | 2,732,414 | 97.06% | 1.142% | South Korea | Asia | HRGM |
| MGYG000003215 | 2,655,157 | 90.93% | 3.37% | United States | North America | UHGG |
| REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_PheChl_Fiber-Hadza-Nepal_A_8_1525.160 | 2,753,087 | 93.61% | 2.07% | NA | Africa | Hadza |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2399_CGC5 | CGCFAM_00002 | Yes | 9 | 6 | |
| HRGMv2_2399_CGC6 | CGCFAM_00003 | Yes | 8 | 3 | |
| HRGMv2_2399_CGC1 | CGCFAM_00010 | Yes | 6 | 1 | alpha-glucan |
| HRGMv2_2399_CGC25 | CGCFAM_00046 | Yes | 5 | 2 | |
| HRGMv2_2399_CGC11 | CGCFAM_00051 | Yes | 3 | 1 | |
| HRGMv2_2399_CGC7 | CGCFAM_00064 | Yes | 5 | 1 | |
| HRGMv2_2399_CGC20 | CGCFAM_00074 | Yes | 6 | 3 | |
| HRGMv2_2399_CGC29 | CGCFAM_00385 | Yes | 4 | 1 | |
| HRGMv2_2399_CGC36 | CGCFAM_01513 | Yes | 3 | 1 | |
| HRGMv2_2399_CGC2 | CGCFAM_01921 | Yes | 6 | 1 | |
| HRGMv2_2399_CGC9 | CGCFAM_02071 | Yes | 3 | 1 | |
| HRGMv2_2399_CGC12 | CGCFAM_04715 | Yes | 5 | 1 | |
| HRGMv2_2399_CGC15 | CGCFAM_05248 | Yes | 4 | 1 |
Top CAZyme Families