Cluster: HRGMv2_2399_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2399
- CGC Family ID: CGCFAM_01921
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2399_1 | HRGMv2_2399_1_100 | 110158 | 111354 | + | 9.B.10.1.1 |
| pfam | HRGMv2_2399_1 | HRGMv2_2399_1_101 | 111422 | 112363 | + | cobW | DUF1980_C |
| TC | HRGMv2_2399_1 | HRGMv2_2399_1_102 | 112735 | 113814 | + | 3.A.1.34.1 |
| pfam | HRGMv2_2399_1 | HRGMv2_2399_1_103 | 114052 | 114981 | + | BPD_transp_2 |
| TC | HRGMv2_2399_1 | HRGMv2_2399_1_104 | 114981 | 115793 | + | 3.A.1.34.1 |
| CAZyme | HRGMv2_2399_1 | HRGMv2_2399_1_105 | 115962 | 117596 | + | CE4 |
Gene ID: HRGMv2_2399_1_100
Type: TC
Location: 110158 - 111354 (+)
Type: TC
Location: 110158 - 111354 (+)
Gene ID: HRGMv2_2399_1_101
Type: pfam
Location: 111422 - 112363 (+)
Type: pfam
Location: 111422 - 112363 (+)
Gene ID: HRGMv2_2399_1_102
Type: TC
Location: 112735 - 113814 (+)
Type: TC
Location: 112735 - 113814 (+)
Gene ID: HRGMv2_2399_1_103
Type: pfam
Location: 114052 - 114981 (+)
Type: pfam
Location: 114052 - 114981 (+)
Gene ID: HRGMv2_2399_1_104
Type: TC
Location: 114981 - 115793 (+)
Type: TC
Location: 114981 - 115793 (+)
Gene ID: HRGMv2_2399_1_105
Type: CAZyme
Location: 115962 - 117596 (+)
Type: CAZyme
Location: 115962 - 117596 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_B
Species
Roseburia_B zhanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.