Cluster: HRGMv2_2399_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2399
- CGC Family ID: CGCFAM_00010
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2399_1 | HRGMv2_2399_1_59 | 64066 | 65325 | - | 2.A.49.9.2 |
| TC | HRGMv2_2399_1 | HRGMv2_2399_1_60 | 65617 | 67032 | + | 3.A.1.1.45 |
| TC | HRGMv2_2399_1 | HRGMv2_2399_1_61 | 67120 | 67962 | + | 3.A.1.1.45 |
| TC | HRGMv2_2399_1 | HRGMv2_2399_1_62 | 67962 | 68828 | + | 3.A.1.1.45 |
| TF | HRGMv2_2399_1 | HRGMv2_2399_1_63 | 68854 | 69861 | + | LacI |
| CAZyme | HRGMv2_2399_1 | HRGMv2_2399_1_64 | 69884 | 71377 | + | GH77 |
Gene ID: HRGMv2_2399_1_59
Type: TC
Location: 64066 - 65325 (-)
Type: TC
Location: 64066 - 65325 (-)
Gene ID: HRGMv2_2399_1_60
Type: TC
Location: 65617 - 67032 (+)
Type: TC
Location: 65617 - 67032 (+)
Gene ID: HRGMv2_2399_1_61
Type: TC
Location: 67120 - 67962 (+)
Type: TC
Location: 67120 - 67962 (+)
Gene ID: HRGMv2_2399_1_62
Type: TC
Location: 67962 - 68828 (+)
Type: TC
Location: 67962 - 68828 (+)
Gene ID: HRGMv2_2399_1_63
Type: TF
Location: 68854 - 69861 (+)
Type: TF
Location: 68854 - 69861 (+)
Gene ID: HRGMv2_2399_1_64
Type: CAZyme
Location: 69884 - 71377 (+)
Type: CAZyme
Location: 69884 - 71377 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_B
Species
Roseburia_B zhanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.