Cluster: HRGMv2_2399_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2399
- CGC Family ID: CGCFAM_00074
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2399_13 | HRGMv2_2399_13_37 | 36361 | 37506 | + | GT4 |
| CAZyme | HRGMv2_2399_13 | HRGMv2_2399_13_38 | 37543 | 38436 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_2399_13 | HRGMv2_2399_13_39 | 38375 | 39757 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2399_13 | HRGMv2_2399_13_40 | 39732 | 40508 | + | ABC2_membrane |
| TC | HRGMv2_2399_13 | HRGMv2_2399_13_41 | 40523 | 41503 | + | 3.A.1.103.1 |
| CAZyme | HRGMv2_2399_13 | HRGMv2_2399_13_42 | 41510 | 45679 | + | GT4 |
Gene ID: HRGMv2_2399_13_37
Type: CAZyme
Location: 36361 - 37506 (+)
Type: CAZyme
Location: 36361 - 37506 (+)
Gene ID: HRGMv2_2399_13_38
Type: CAZyme
Location: 37543 - 38436 (+)
Type: CAZyme
Location: 37543 - 38436 (+)
Gene ID: HRGMv2_2399_13_39
Type:
Location: 38375 - 39757 (+)
Type:
Location: 38375 - 39757 (+)
Gene ID: HRGMv2_2399_13_40
Type: pfam
Location: 39732 - 40508 (+)
Type: pfam
Location: 39732 - 40508 (+)
Gene ID: HRGMv2_2399_13_41
Type: TC
Location: 40523 - 41503 (+)
Type: TC
Location: 40523 - 41503 (+)
Gene ID: HRGMv2_2399_13_42
Type: CAZyme
Location: 41510 - 45679 (+)
Type: CAZyme
Location: 41510 - 45679 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_B
Species
Roseburia_B zhanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.