Cluster: HRGMv2_2399_CGC29
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2399
- CGC Family ID: CGCFAM_00385
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2399_25 | HRGMv2_2399_25_17 | 30129 | 35096 | + | GH43_22 | GH43_34 |
| TF | HRGMv2_2399_25 | HRGMv2_2399_25_18 | 35337 | 36368 | + | 0043758 |
| pfam | HRGMv2_2399_25 | HRGMv2_2399_25_19 | 36397 | 37053 | + | GrpE |
| TC | HRGMv2_2399_25 | HRGMv2_2399_25_20 | 37087 | 38625 | + | 1.A.33.1.4 |
Gene ID: HRGMv2_2399_25_17
Type: CAZyme
Location: 30129 - 35096 (+)
Type: CAZyme
Location: 30129 - 35096 (+)
Gene ID: HRGMv2_2399_25_18
Type: TF
Location: 35337 - 36368 (+)
Type: TF
Location: 35337 - 36368 (+)
Gene ID: HRGMv2_2399_25_19
Type: pfam
Location: 36397 - 37053 (+)
Type: pfam
Location: 36397 - 37053 (+)
Gene ID: HRGMv2_2399_25_20
Type: TC
Location: 37087 - 38625 (+)
Type: TC
Location: 37087 - 38625 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia_B
Species
Roseburia_B zhanii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.