Genome Details
Selected Rep_genome_ID: HRGMv2_2371
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
JAGTTR01
Species
JAGTTR01 sp018223385
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_2371 | 2,666,486 | 98.31% | 0.791% | South Korea | Asia | HRGM |
| REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_PheChl_Fiber-Hadza-Nepal_E_8_1528.223 | 2,484,500 | 94.42% | 0.32% | NA | Africa | Hadza |
| Rep_2240 | 2,604,862 | 97.2616% | 0.949367% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2371_CGC2 | CGCFAM_00003 | Yes | 15 | 8 | |
| HRGMv2_2371_CGC8 | CGCFAM_00005 | Yes | 9 | 5 | |
| HRGMv2_2371_CGC9 | CGCFAM_00009 | Yes | 8 | 4 | |
| HRGMv2_2371_CGC10 | CGCFAM_00039 | Yes | 6 | 3 | |
| HRGMv2_2371_CGC14 | CGCFAM_00086 | Yes | 4 | 1 | |
| HRGMv2_2371_CGC13 | CGCFAM_00460 | Yes | 4 | 1 | |
| HRGMv2_2371_CGC4 | CGCFAM_00988 | Yes | 9 | 1 | |
| HRGMv2_2371_CGC5 | CGCFAM_01624 | Yes | 4 | 1 | |
| HRGMv2_2371_CGC15 | CGCFAM_02657 | Yes | 10 | 1 | |
| HRGMv2_2371_CGC7 | CGCFAM_02898 | Yes | 3 | 1 | |
| HRGMv2_2371_CGC12 | CGCFAM_10056 | Yes | 3 | 1 |
Top CAZyme Families