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Cluster: HRGMv2_2371_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2371_16 HRGMv2_2371_16_17 15518 16027 - 2.A.87.3.1
pfam HRGMv2_2371_16 HRGMv2_2371_16_18 16086 16442 - NusG_II
pfam HRGMv2_2371_16 HRGMv2_2371_16_19 16631 17668 + ApbE
CAZyme HRGMv2_2371_16 HRGMv2_2371_16_20 17753 19981 - GT51
TC HRGMv2_2371_16 HRGMv2_2371_16_21 20197 21123 - 3.D.6.1.2
TC HRGMv2_2371_16 HRGMv2_2371_16_22 21139 21714 - 3.D.6.1.2
TC HRGMv2_2371_16 HRGMv2_2371_16_23 21729 22370 - 3.D.6.1.2
TC HRGMv2_2371_16 HRGMv2_2371_16_24 22384 22977 - 3.D.6.1.2
TC HRGMv2_2371_16 HRGMv2_2371_16_25 22977 23927 - 3.D.6.1.2
TC HRGMv2_2371_16 HRGMv2_2371_16_26 23955 25271 - 3.D.6.1.2
Gene ID: HRGMv2_2371_16_17
Type: TC
Location: 15518 - 16027 (-)
Gene ID: HRGMv2_2371_16_18
Type: pfam
Location: 16086 - 16442 (-)
Gene ID: HRGMv2_2371_16_19
Type: pfam
Location: 16631 - 17668 (+)
Gene ID: HRGMv2_2371_16_20
Type: CAZyme
Location: 17753 - 19981 (-)
Gene ID: HRGMv2_2371_16_21
Type: TC
Location: 20197 - 21123 (-)
Gene ID: HRGMv2_2371_16_22
Type: TC
Location: 21139 - 21714 (-)
Gene ID: HRGMv2_2371_16_23
Type: TC
Location: 21729 - 22370 (-)
Gene ID: HRGMv2_2371_16_24
Type: TC
Location: 22384 - 22977 (-)
Gene ID: HRGMv2_2371_16_25
Type: TC
Location: 22977 - 23927 (-)
Gene ID: HRGMv2_2371_16_26
Type: TC
Location: 23955 - 25271 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2371_16_18 vegetarian > omnivore 1.10977 0.00694
HRGMv2_2371_16_26 vegetarian > omnivore 1.01958 0.00694

🧭 Explore Read Mapping of CGC

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