Cluster: HRGMv2_2371_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2371
- CGC Family ID: CGCFAM_00460
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2371_8 | HRGMv2_2371_8_52 | 58316 | 59065 | - | CE4 |
| TC | HRGMv2_2371_8 | HRGMv2_2371_8_53 | 59244 | 60614 | + | 2.A.66.1.32 |
| pfam | HRGMv2_2371_8 | HRGMv2_2371_8_54 | 60632 | 60805 | + | DUF4250 |
| TC | HRGMv2_2371_8 | HRGMv2_2371_8_55 | 60903 | 63491 | - | 3.A.9.1.2 |
Gene ID: HRGMv2_2371_8_52
Type: CAZyme
Location: 58316 - 59065 (-)
Type: CAZyme
Location: 58316 - 59065 (-)
Gene ID: HRGMv2_2371_8_53
Type: TC
Location: 59244 - 60614 (+)
Type: TC
Location: 59244 - 60614 (+)
Gene ID: HRGMv2_2371_8_54
Type: pfam
Location: 60632 - 60805 (+)
Type: pfam
Location: 60632 - 60805 (+)
Gene ID: HRGMv2_2371_8_55
Type: TC
Location: 60903 - 63491 (-)
Type: TC
Location: 60903 - 63491 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
JAGTTR01
Species
JAGTTR01 sp018223385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2371_8_52 | vegetarian > omnivore | 1.36813 | 0.00694 |
| HRGMv2_2371_8_52 | vegetarian > vegan | 1.05432 | 0.00442 |
| HRGMv2_2371_8_54 | vegetarian > omnivore | 2.00759 | 0.00694 |
| HRGMv2_2371_8_54 | vegetarian > vegan | 1.77356 | 0.00442 |