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Genome Details

Selected Rep_genome_ID: HRGMv2_0538
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→
Species
Alistipes montrealensis
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
CGMR059057 3,364,346 96.88% 0% China Asia CGMR
HRGMv2_0538 3,244,803 98.15% 0% China Asia HRGM
Rep_612 3,325,933 96.4744% 0.480769% NA NA WIS
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0538_CGC2 CGCFAM_00001 Yes 4 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0538_CGC23 CGCFAM_00001 Yes 8 3 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0538_CGC36 CGCFAM_00003 Yes 4 1
HRGMv2_0538_CGC24 CGCFAM_00006 Yes 9 6
HRGMv2_0538_CGC18 CGCFAM_00016 Yes 5 2 host glycan
HRGMv2_0538_CGC40 CGCFAM_00016 Yes 4 1 host glycan
HRGMv2_0538_CGC8 CGCFAM_00023 Yes 3 1
HRGMv2_0538_CGC3 CGCFAM_00095 Yes 6 4
HRGMv2_0538_CGC4 CGCFAM_00152 Yes 10 4
HRGMv2_0538_CGC38 CGCFAM_00219 Yes 3 1 host glycan
HRGMv2_0538_CGC19 CGCFAM_00437 Yes 7 1
HRGMv2_0538_CGC33 CGCFAM_00439 Yes 6 2 host glycan
HRGMv2_0538_CGC16 CGCFAM_00519 Yes 4 1
HRGMv2_0538_CGC25 CGCFAM_00540 Yes 6 4 pectin
HRGMv2_0538_CGC28 CGCFAM_00617 Yes 10 1
HRGMv2_0538_CGC37 CGCFAM_00756 Yes 5 3
HRGMv2_0538_CGC12 CGCFAM_00921 Yes 6 1
HRGMv2_0538_CGC31 CGCFAM_01434 Yes 4 1
HRGMv2_0538_CGC22 CGCFAM_01494 Yes 13 6
HRGMv2_0538_CGC21 CGCFAM_01681 Yes 7 1
HRGMv2_0538_CGC9 CGCFAM_01741 Yes 6 2
HRGMv2_0538_CGC5 CGCFAM_01768 Yes 5 1
HRGMv2_0538_CGC10 CGCFAM_02181 Yes 7 1
HRGMv2_0538_CGC41 CGCFAM_02217 Yes 4 1
HRGMv2_0538_CGC32 CGCFAM_02756 Yes 4 1
Top CAZyme Families