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Cluster: HRGMv2_0538_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0538_50 HRGMv2_0538_50_4 4458 5348 + GT2
CAZyme HRGMv2_0538_50 HRGMv2_0538_50_5 5345 6541 + GT2
CAZyme HRGMv2_0538_50 HRGMv2_0538_50_6 6538 7656 + GT4
pfam HRGMv2_0538_50 HRGMv2_0538_50_7 7689 8294 + Hexapep | Hexapep_2 | Hexapep_2
CAZyme HRGMv2_0538_50 HRGMv2_0538_50_8 8279 9391 + GT94
TC HRGMv2_0538_50 HRGMv2_0538_50_9 9372 10850 + 2.A.66.2.7
NULL(UNKNOWN) HRGMv2_0538_50 HRGMv2_0538_50_10 10858 11991 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0538_50 HRGMv2_0538_50_11 11988 12737 + GT32
CAZyme HRGMv2_0538_50 HRGMv2_0538_50_12 12751 13923 + GT2
Gene ID: HRGMv2_0538_50_4
Type: CAZyme
Location: 4458 - 5348 (+)
Gene ID: HRGMv2_0538_50_5
Type: CAZyme
Location: 5345 - 6541 (+)
Gene ID: HRGMv2_0538_50_6
Type: CAZyme
Location: 6538 - 7656 (+)
Gene ID: HRGMv2_0538_50_7
Type: pfam
Location: 7689 - 8294 (+)
Gene ID: HRGMv2_0538_50_8
Type: CAZyme
Location: 8279 - 9391 (+)
Gene ID: HRGMv2_0538_50_9
Type: TC
Location: 9372 - 10850 (+)
Gene ID: HRGMv2_0538_50_10
Type:
Location: 10858 - 11991 (+)
Gene ID: HRGMv2_0538_50_11
Type: CAZyme
Location: 11988 - 12737 (+)
Gene ID: HRGMv2_0538_50_12
Type: CAZyme
Location: 12751 - 13923 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0538_50_10 vegetarian > vegan 1.30886 0.01360

🧭 Explore Read Mapping of CGC

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