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Cluster: HRGMv2_0538_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0538_22 HRGMv2_0538_22_18 21247 22650 + 2.A.25.1.5
pfam HRGMv2_0538_22 HRGMv2_0538_22_19 22675 23502 - OMP_b-brl_2
pfam HRGMv2_0538_22 HRGMv2_0538_22_20 23520 26267 - PCMD
TC HRGMv2_0538_22 HRGMv2_0538_22_21 26604 27758 - 9.B.97.1.2
TF HRGMv2_0538_22 HRGMv2_0538_22_22 27900 28934 - GntR
CAZyme HRGMv2_0538_22 HRGMv2_0538_22_23 29097 30572 + GH39
TC HRGMv2_0538_22 HRGMv2_0538_22_24 30588 31850 + 2.A.1.49.10
Gene ID: HRGMv2_0538_22_18
Type: TC
Location: 21247 - 22650 (+)
Gene ID: HRGMv2_0538_22_19
Type: pfam
Location: 22675 - 23502 (-)
Gene ID: HRGMv2_0538_22_20
Type: pfam
Location: 23520 - 26267 (-)
Gene ID: HRGMv2_0538_22_21
Type: TC
Location: 26604 - 27758 (-)
Gene ID: HRGMv2_0538_22_22
Type: TF
Location: 27900 - 28934 (-)
Gene ID: HRGMv2_0538_22_23
Type: CAZyme
Location: 29097 - 30572 (+)
Gene ID: HRGMv2_0538_22_24
Type: TC
Location: 30588 - 31850 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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