Cluster: HRGMv2_0538_CGC22
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0538
- CGC Family ID: CGCFAM_01494
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0538_45 | HRGMv2_0538_45_1 | 1 | 915 | - | GH32 |
| pfam | HRGMv2_0538_45 | HRGMv2_0538_45_2 | 1333 | 2940 | + | PEPCK_ATP |
| TC | HRGMv2_0538_45 | HRGMv2_0538_45_3 | 3124 | 3750 | - | 9.B.171.1.4 |
| pfam | HRGMv2_0538_45 | HRGMv2_0538_45_4 | 3851 | 5764 | - | SusE |
| CAZyme | HRGMv2_0538_45 | HRGMv2_0538_45_5 | 6174 | 8180 | + | GH97 |
| CAZyme | HRGMv2_0538_45 | HRGMv2_0538_45_6 | 8207 | 9397 | + | GH130_1 |
| TC | HRGMv2_0538_45 | HRGMv2_0538_45_7 | 9394 | 10836 | + | 2.A.2.3.5 |
| pfam | HRGMv2_0538_45 | HRGMv2_0538_45_8 | 10833 | 12047 | + | GlcNAc_2-epim |
| TF | HRGMv2_0538_45 | HRGMv2_0538_45_9 | 12067 | 12960 | + | HTH_AraC |
| CAZyme | HRGMv2_0538_45 | HRGMv2_0538_45_10 | 12987 | 14093 | + | GH26 |
| CAZyme | HRGMv2_0538_45 | HRGMv2_0538_45_11 | 14120 | 15241 | + | GH26 |
| CAZyme | HRGMv2_0538_45 | HRGMv2_0538_45_12 | 15254 | 16594 | + | GH37 |
| TC | HRGMv2_0538_45 | HRGMv2_0538_45_13 | 16607 | 18376 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_0538_45_1
Type: CAZyme
Location: 1 - 915 (-)
Type: CAZyme
Location: 1 - 915 (-)
Gene ID: HRGMv2_0538_45_2
Type: pfam
Location: 1333 - 2940 (+)
Type: pfam
Location: 1333 - 2940 (+)
Gene ID: HRGMv2_0538_45_3
Type: TC
Location: 3124 - 3750 (-)
Type: TC
Location: 3124 - 3750 (-)
Gene ID: HRGMv2_0538_45_4
Type: pfam
Location: 3851 - 5764 (-)
Type: pfam
Location: 3851 - 5764 (-)
Gene ID: HRGMv2_0538_45_5
Type: CAZyme
Location: 6174 - 8180 (+)
Type: CAZyme
Location: 6174 - 8180 (+)
Gene ID: HRGMv2_0538_45_6
Type: CAZyme
Location: 8207 - 9397 (+)
Type: CAZyme
Location: 8207 - 9397 (+)
Gene ID: HRGMv2_0538_45_7
Type: TC
Location: 9394 - 10836 (+)
Type: TC
Location: 9394 - 10836 (+)
Gene ID: HRGMv2_0538_45_8
Type: pfam
Location: 10833 - 12047 (+)
Type: pfam
Location: 10833 - 12047 (+)
Gene ID: HRGMv2_0538_45_9
Type: TF
Location: 12067 - 12960 (+)
Type: TF
Location: 12067 - 12960 (+)
Gene ID: HRGMv2_0538_45_10
Type: CAZyme
Location: 12987 - 14093 (+)
Type: CAZyme
Location: 12987 - 14093 (+)
Gene ID: HRGMv2_0538_45_11
Type: CAZyme
Location: 14120 - 15241 (+)
Type: CAZyme
Location: 14120 - 15241 (+)
Gene ID: HRGMv2_0538_45_12
Type: CAZyme
Location: 15254 - 16594 (+)
Type: CAZyme
Location: 15254 - 16594 (+)
Gene ID: HRGMv2_0538_45_13
Type: TC
Location: 16607 - 18376 (+)
Type: TC
Location: 16607 - 18376 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes montrealensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.