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Cluster: HRGMv2_0538_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0538_8 HRGMv2_0538_8_14 26352 29552 - 1.B.14.6.1
CAZyme HRGMv2_0538_8 HRGMv2_0538_8_15 29893 31524 - GH20
sulfatase HRGMv2_0538_8 HRGMv2_0538_8_16 31529 32350 - S1_7
pfam HRGMv2_0538_8 HRGMv2_0538_8_17 32358 33356 - Metallophos
CAZyme HRGMv2_0538_8 HRGMv2_0538_8_18 33378 34994 - GH63
pfam HRGMv2_0538_8 HRGMv2_0538_8_19 34972 36945 - Alk_phosphatase
pfam HRGMv2_0538_8 HRGMv2_0538_8_20 36961 37809 - Exo_endo_phos
CAZyme HRGMv2_0538_8 HRGMv2_0538_8_21 37821 40715 - GH92
STP HRGMv2_0538_8 HRGMv2_0538_8_22 41018 41713 + Peripla_BP_3
CAZyme HRGMv2_0538_8 HRGMv2_0538_8_23 42284 43867 - GH20
Gene ID: HRGMv2_0538_8_14
Type: TC
Location: 26352 - 29552 (-)
Gene ID: HRGMv2_0538_8_15
Type: CAZyme
Location: 29893 - 31524 (-)
Gene ID: HRGMv2_0538_8_16
Type: sulfatase
Location: 31529 - 32350 (-)
Gene ID: HRGMv2_0538_8_17
Type: pfam
Location: 32358 - 33356 (-)
Gene ID: HRGMv2_0538_8_18
Type: CAZyme
Location: 33378 - 34994 (-)
Gene ID: HRGMv2_0538_8_19
Type: pfam
Location: 34972 - 36945 (-)
Gene ID: HRGMv2_0538_8_20
Type: pfam
Location: 36961 - 37809 (-)
Gene ID: HRGMv2_0538_8_21
Type: CAZyme
Location: 37821 - 40715 (-)
Gene ID: HRGMv2_0538_8_22
Type: STP
Location: 41018 - 41713 (+)
Gene ID: HRGMv2_0538_8_23
Type: CAZyme
Location: 42284 - 43867 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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