Cluster: HRGMv2_0538_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0538
- CGC Family ID: CGCFAM_00921
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0538_25 | HRGMv2_0538_25_19 | 18214 | 20166 | + | 2.A.16.2.2 |
| pfam | HRGMv2_0538_25 | HRGMv2_0538_25_20 | 20188 | 20796 | + | DNA_pol_A_exo1 |
| pfam | HRGMv2_0538_25 | HRGMv2_0538_25_21 | 20793 | 21992 | + | Cons_hypoth95 | MTS | Methyltrans_SAM | PUA_3 |
| CAZyme | HRGMv2_0538_25 | HRGMv2_0538_25_22 | 21995 | 22837 | + | CE1 |
| NULL(UNKNOWN) | HRGMv2_0538_25 | HRGMv2_0538_25_23 | 22892 | 23731 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0538_25 | HRGMv2_0538_25_24 | 23840 | 25789 | - | 2.A.9.3.1 |
Gene ID: HRGMv2_0538_25_19
Type: TC
Location: 18214 - 20166 (+)
Type: TC
Location: 18214 - 20166 (+)
Gene ID: HRGMv2_0538_25_20
Type: pfam
Location: 20188 - 20796 (+)
Type: pfam
Location: 20188 - 20796 (+)
Gene ID: HRGMv2_0538_25_21
Type: pfam
Location: 20793 - 21992 (+)
Type: pfam
Location: 20793 - 21992 (+)
Gene ID: HRGMv2_0538_25_22
Type: CAZyme
Location: 21995 - 22837 (+)
Type: CAZyme
Location: 21995 - 22837 (+)
Gene ID: HRGMv2_0538_25_23
Type:
Location: 22892 - 23731 (-)
Type:
Location: 22892 - 23731 (-)
Gene ID: HRGMv2_0538_25_24
Type: TC
Location: 23840 - 25789 (-)
Type: TC
Location: 23840 - 25789 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes montrealensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.