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Genome Details

Selected Rep_genome_ID: HRGMv2_0383
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→
Species
Phocaeicola caecigallinarum
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
HRGMv2_0383 3,708,679 98.5% 0% UK Europe HRGM
MGYG000001789 3,544,186 98.13% 0% Denmark Europe UHGG
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0383_CGC10 CGCFAM_00001 Yes 6 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0383_CGC12 CGCFAM_00001 Yes 4 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0383_CGC15 CGCFAM_00001 Yes 3 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0383_CGC38 CGCFAM_00001 Yes 5 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0383_CGC16 CGCFAM_00034 Yes 3 2
HRGMv2_0383_CGC30 CGCFAM_00077 Yes 7 1
HRGMv2_0383_CGC32 CGCFAM_00101 Yes 12 8 beta-glucan
HRGMv2_0383_CGC42 CGCFAM_00101 Yes 8 4 beta-glucan
HRGMv2_0383_CGC41 CGCFAM_00116 Yes 10 4 xylan/beta-glucan
HRGMv2_0383_CGC28 CGCFAM_00151 Yes 4 3
HRGMv2_0383_CGC45 CGCFAM_00265 Yes 8 2 beta-glucan
HRGMv2_0383_CGC2 CGCFAM_00296 Yes 7 3
HRGMv2_0383_CGC17 CGCFAM_00304 Yes 7 1
HRGMv2_0383_CGC9 CGCFAM_00352 Yes 8 1
HRGMv2_0383_CGC23 CGCFAM_00367 Yes 3 1
HRGMv2_0383_CGC14 CGCFAM_00774 Yes 3 1
HRGMv2_0383_CGC31 CGCFAM_01122 Yes 7 4
HRGMv2_0383_CGC1 CGCFAM_01306 Yes 4 1
HRGMv2_0383_CGC20 CGCFAM_01349 Yes 3 1
HRGMv2_0383_CGC7 CGCFAM_02390 Yes 6 2
HRGMv2_0383_CGC46 CGCFAM_02810 Yes 5 2
HRGMv2_0383_CGC3 CGCFAM_03677 Yes 4 2
HRGMv2_0383_CGC5 CGCFAM_04402 Yes 16 7
HRGMv2_0383_CGC13 CGCFAM_05994 Yes 11 6
HRGMv2_0383_CGC36 CGCFAM_05995 Yes 5 4
Top CAZyme Families