Cluster: HRGMv2_0383_CGC5
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_0383
- CGC Family ID: CGCFAM_04402
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0383_7 | HRGMv2_0383_7_4 | 1879 | 3285 | - | GH28 |
| TC | HRGMv2_0383_7 | HRGMv2_0383_7_5 | 3470 | 3895 | - | 1.A.22.1.1 |
| pfam | HRGMv2_0383_7 | HRGMv2_0383_7_6 | 4020 | 5348 | + | TonB_C |
| CAZyme | HRGMv2_0383_7 | HRGMv2_0383_7_7 | 5641 | 7218 | + | PL1_2 |
| CAZyme | HRGMv2_0383_7 | HRGMv2_0383_7_8 | 7232 | 8689 | + | PL1_2 |
| CAZyme | HRGMv2_0383_7 | HRGMv2_0383_7_9 | 8707 | 10893 | + | CE19 | PL10_1 |
| CAZyme | HRGMv2_0383_7 | HRGMv2_0383_7_10 | 10913 | 12637 | + | CE12 | CE8 |
| CAZyme | HRGMv2_0383_7 | HRGMv2_0383_7_11 | 12727 | 14829 | - | CE8 | GH105 |
| NULL(UNKNOWN) | HRGMv2_0383_7 | HRGMv2_0383_7_12 | 14902 | 15123 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0383_7 | HRGMv2_0383_7_13 | 15107 | 16495 | + | 4.A.5.1.2 |
| pfam | HRGMv2_0383_7 | HRGMv2_0383_7_14 | 16532 | 17452 | + | KduI |
| TC | HRGMv2_0383_7 | HRGMv2_0383_7_15 | 17514 | 18980 | + | 2.A.1.14.25 |
| CAZyme | HRGMv2_0383_7 | HRGMv2_0383_7_16 | 19146 | 20510 | - | CE7 |
| pfam | HRGMv2_0383_7 | HRGMv2_0383_7_17 | 20552 | 21523 | - | PMI_typeI_cat | MPI_cupin_dom |
| TC | HRGMv2_0383_7 | HRGMv2_0383_7_18 | 22088 | 22783 | - | 2.A.122.1.1 |
| TC | HRGMv2_0383_7 | HRGMv2_0383_7_19 | 22764 | 23114 | - | 1.E.14.1.13 |
Gene ID: HRGMv2_0383_7_4
Type: CAZyme
Location: 1879 - 3285 (-)
Type: CAZyme
Location: 1879 - 3285 (-)
Gene ID: HRGMv2_0383_7_5
Type: TC
Location: 3470 - 3895 (-)
Type: TC
Location: 3470 - 3895 (-)
Gene ID: HRGMv2_0383_7_6
Type: pfam
Location: 4020 - 5348 (+)
Type: pfam
Location: 4020 - 5348 (+)
Gene ID: HRGMv2_0383_7_7
Type: CAZyme
Location: 5641 - 7218 (+)
Type: CAZyme
Location: 5641 - 7218 (+)
Gene ID: HRGMv2_0383_7_8
Type: CAZyme
Location: 7232 - 8689 (+)
Type: CAZyme
Location: 7232 - 8689 (+)
Gene ID: HRGMv2_0383_7_9
Type: CAZyme
Location: 8707 - 10893 (+)
Type: CAZyme
Location: 8707 - 10893 (+)
Gene ID: HRGMv2_0383_7_10
Type: CAZyme
Location: 10913 - 12637 (+)
Type: CAZyme
Location: 10913 - 12637 (+)
Gene ID: HRGMv2_0383_7_11
Type: CAZyme
Location: 12727 - 14829 (-)
Type: CAZyme
Location: 12727 - 14829 (-)
Gene ID: HRGMv2_0383_7_12
Type:
Location: 14902 - 15123 (+)
Type:
Location: 14902 - 15123 (+)
Gene ID: HRGMv2_0383_7_13
Type: TC
Location: 15107 - 16495 (+)
Type: TC
Location: 15107 - 16495 (+)
Gene ID: HRGMv2_0383_7_14
Type: pfam
Location: 16532 - 17452 (+)
Type: pfam
Location: 16532 - 17452 (+)
Gene ID: HRGMv2_0383_7_15
Type: TC
Location: 17514 - 18980 (+)
Type: TC
Location: 17514 - 18980 (+)
Gene ID: HRGMv2_0383_7_16
Type: CAZyme
Location: 19146 - 20510 (-)
Type: CAZyme
Location: 19146 - 20510 (-)
Gene ID: HRGMv2_0383_7_17
Type: pfam
Location: 20552 - 21523 (-)
Type: pfam
Location: 20552 - 21523 (-)
Gene ID: HRGMv2_0383_7_18
Type: TC
Location: 22088 - 22783 (-)
Type: TC
Location: 22088 - 22783 (-)
Gene ID: HRGMv2_0383_7_19
Type: TC
Location: 22764 - 23114 (-)
Type: TC
Location: 22764 - 23114 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola caecigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.