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Cluster: HRGMv2_0383_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0383_67 HRGMv2_0383_67_4 2481 3497 + GH43_29
CAZyme HRGMv2_0383_67 HRGMv2_0383_67_5 3507 4664 + CE1
CAZyme HRGMv2_0383_67 HRGMv2_0383_67_6 4664 5770 + CE1
pfam HRGMv2_0383_67 HRGMv2_0383_67_7 6560 6817 - Collagen
TC HRGMv2_0383_67 HRGMv2_0383_67_8 7160 10348 + 1.B.14.6.1
pfam HRGMv2_0383_67 HRGMv2_0383_67_9 10361 12301 + SusD_RagB | SusD-like_3
TC HRGMv2_0383_67 HRGMv2_0383_67_10 12344 15223 + 1.B.14.6.1
pfam HRGMv2_0383_67 HRGMv2_0383_67_11 15245 17017 + SusD_RagB | SusD-like_3
pfam HRGMv2_0383_67 HRGMv2_0383_67_12 17057 18091 + BT_3987-like_N | DUF5627
CAZyme HRGMv2_0383_67 HRGMv2_0383_67_13 18096 20429 + GH10
Gene ID: HRGMv2_0383_67_4
Type: CAZyme
Location: 2481 - 3497 (+)
Gene ID: HRGMv2_0383_67_5
Type: CAZyme
Location: 3507 - 4664 (+)
Gene ID: HRGMv2_0383_67_6
Type: CAZyme
Location: 4664 - 5770 (+)
Gene ID: HRGMv2_0383_67_7
Type: pfam
Location: 6560 - 6817 (-)
Gene ID: HRGMv2_0383_67_8
Type: TC
Location: 7160 - 10348 (+)
Gene ID: HRGMv2_0383_67_9
Type: pfam
Location: 10361 - 12301 (+)
Gene ID: HRGMv2_0383_67_10
Type: TC
Location: 12344 - 15223 (+)
Gene ID: HRGMv2_0383_67_11
Type: pfam
Location: 15245 - 17017 (+)
Gene ID: HRGMv2_0383_67_12
Type: pfam
Location: 17057 - 18091 (+)
Gene ID: HRGMv2_0383_67_13
Type: CAZyme
Location: 18096 - 20429 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0383_67_7 vegetarian > vegan 1.17089 0.04449

🧭 Explore Read Mapping of CGC

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