Cluster: HRGMv2_0383_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0383
- CGC Family ID: CGCFAM_05994
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0383_15 | HRGMv2_0383_15_14 | 15071 | 17332 | - | GH92 |
| NULL(UNKNOWN) | HRGMv2_0383_15 | HRGMv2_0383_15_15 | 17896 | 18096 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0383_15 | HRGMv2_0383_15_16 | 18196 | 19560 | - | GH57 |
| CAZyme | HRGMv2_0383_15 | HRGMv2_0383_15_17 | 19576 | 20850 | - | GT4 |
| CAZyme | HRGMv2_0383_15 | HRGMv2_0383_15_18 | 20866 | 22809 | - | GH133 |
| CAZyme | HRGMv2_0383_15 | HRGMv2_0383_15_19 | 23082 | 25436 | - | GH35 |
| CAZyme | HRGMv2_0383_15 | HRGMv2_0383_15_20 | 25651 | 27579 | + | GH43_19 | GH43_34 |
| TC | HRGMv2_0383_15 | HRGMv2_0383_15_21 | 27761 | 29320 | - | 1.B.9.4.2 |
| NULL(UNKNOWN) | HRGMv2_0383_15 | HRGMv2_0383_15_22 | 29354 | 30571 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0383_15 | HRGMv2_0383_15_23 | 30714 | 30818 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0383_15 | HRGMv2_0383_15_24 | 31467 | 34487 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_0383_15_14
Type: CAZyme
Location: 15071 - 17332 (-)
Type: CAZyme
Location: 15071 - 17332 (-)
Gene ID: HRGMv2_0383_15_15
Type:
Location: 17896 - 18096 (+)
Type:
Location: 17896 - 18096 (+)
Gene ID: HRGMv2_0383_15_16
Type: CAZyme
Location: 18196 - 19560 (-)
Type: CAZyme
Location: 18196 - 19560 (-)
Gene ID: HRGMv2_0383_15_17
Type: CAZyme
Location: 19576 - 20850 (-)
Type: CAZyme
Location: 19576 - 20850 (-)
Gene ID: HRGMv2_0383_15_18
Type: CAZyme
Location: 20866 - 22809 (-)
Type: CAZyme
Location: 20866 - 22809 (-)
Gene ID: HRGMv2_0383_15_19
Type: CAZyme
Location: 23082 - 25436 (-)
Type: CAZyme
Location: 23082 - 25436 (-)
Gene ID: HRGMv2_0383_15_20
Type: CAZyme
Location: 25651 - 27579 (+)
Type: CAZyme
Location: 25651 - 27579 (+)
Gene ID: HRGMv2_0383_15_21
Type: TC
Location: 27761 - 29320 (-)
Type: TC
Location: 27761 - 29320 (-)
Gene ID: HRGMv2_0383_15_22
Type:
Location: 29354 - 30571 (-)
Type:
Location: 29354 - 30571 (-)
Gene ID: HRGMv2_0383_15_23
Type:
Location: 30714 - 30818 (-)
Type:
Location: 30714 - 30818 (-)
Gene ID: HRGMv2_0383_15_24
Type: TC
Location: 31467 - 34487 (+)
Type: TC
Location: 31467 - 34487 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola caecigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.