Cluster: HRGMv2_0383_CGC32
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate: beta-glucan
- Genome ID: HRGMv2_0383
- CGC Family ID: CGCFAM_00101
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0383_48 | HRGMv2_0383_48_1 | 121 | 2064 | - | GH97 |
| CAZyme | HRGMv2_0383_48 | HRGMv2_0383_48_2 | 2293 | 4755 | - | GH2 |
| CAZyme | HRGMv2_0383_48 | HRGMv2_0383_48_3 | 4752 | 7652 | - | CBM91 | GH43_12 | GH43_16 |
| CAZyme | HRGMv2_0383_48 | HRGMv2_0383_48_4 | 7763 | 9214 | - | GH5_4 |
| pfam | HRGMv2_0383_48 | HRGMv2_0383_48_5 | 9234 | 10748 | - | SGBP_B_XBD |
| pfam | HRGMv2_0383_48 | HRGMv2_0383_48_6 | 10761 | 12407 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0383_48 | HRGMv2_0383_48_7 | 12432 | 15614 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0383_48 | HRGMv2_0383_48_8 | 16003 | 18147 | - | CBM91 | GH43_10 |
| CAZyme | HRGMv2_0383_48 | HRGMv2_0383_48_9 | 18400 | 20754 | - | GH3 |
| CAZyme | HRGMv2_0383_48 | HRGMv2_0383_48_10 | 20830 | 23268 | - | GH95 |
| NULL(UNKNOWN) | HRGMv2_0383_48 | HRGMv2_0383_48_11 | 23923 | 24126 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0383_48 | HRGMv2_0383_48_12 | 24184 | 25434 | + | GH5_4 |
Gene ID: HRGMv2_0383_48_1
Type: CAZyme
Location: 121 - 2064 (-)
Type: CAZyme
Location: 121 - 2064 (-)
Gene ID: HRGMv2_0383_48_2
Type: CAZyme
Location: 2293 - 4755 (-)
Type: CAZyme
Location: 2293 - 4755 (-)
Gene ID: HRGMv2_0383_48_3
Type: CAZyme
Location: 4752 - 7652 (-)
Type: CAZyme
Location: 4752 - 7652 (-)
Gene ID: HRGMv2_0383_48_4
Type: CAZyme
Location: 7763 - 9214 (-)
Type: CAZyme
Location: 7763 - 9214 (-)
Gene ID: HRGMv2_0383_48_5
Type: pfam
Location: 9234 - 10748 (-)
Type: pfam
Location: 9234 - 10748 (-)
Gene ID: HRGMv2_0383_48_6
Type: pfam
Location: 10761 - 12407 (-)
Type: pfam
Location: 10761 - 12407 (-)
Gene ID: HRGMv2_0383_48_7
Type: TC
Location: 12432 - 15614 (-)
Type: TC
Location: 12432 - 15614 (-)
Gene ID: HRGMv2_0383_48_8
Type: CAZyme
Location: 16003 - 18147 (-)
Type: CAZyme
Location: 16003 - 18147 (-)
Gene ID: HRGMv2_0383_48_9
Type: CAZyme
Location: 18400 - 20754 (-)
Type: CAZyme
Location: 18400 - 20754 (-)
Gene ID: HRGMv2_0383_48_10
Type: CAZyme
Location: 20830 - 23268 (-)
Type: CAZyme
Location: 20830 - 23268 (-)
Gene ID: HRGMv2_0383_48_11
Type:
Location: 23923 - 24126 (+)
Type:
Location: 23923 - 24126 (+)
Gene ID: HRGMv2_0383_48_12
Type: CAZyme
Location: 24184 - 25434 (+)
Type: CAZyme
Location: 24184 - 25434 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola caecigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.