Cluster: HRGMv2_0383_CGC46
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0383
- CGC Family ID: CGCFAM_02810
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0383_97 | HRGMv2_0383_97_5 | 4415 | 5122 | + | 1.A.14.2.2 |
| STP | HRGMv2_0383_97 | HRGMv2_0383_97_6 | 5194 | 6387 | + | Aminotran_1_2 |
| CAZyme | HRGMv2_0383_97 | HRGMv2_0383_97_7 | 6557 | 8773 | - | GH36 |
| peptidase | HRGMv2_0383_97 | HRGMv2_0383_97_8 | 8922 | 9722 | + | M48.UPC |
| CAZyme | HRGMv2_0383_97 | HRGMv2_0383_97_9 | 9848 | 12649 | + | GH2 |
Gene ID: HRGMv2_0383_97_5
Type: TC
Location: 4415 - 5122 (+)
Type: TC
Location: 4415 - 5122 (+)
Gene ID: HRGMv2_0383_97_6
Type: STP
Location: 5194 - 6387 (+)
Type: STP
Location: 5194 - 6387 (+)
Gene ID: HRGMv2_0383_97_7
Type: CAZyme
Location: 6557 - 8773 (-)
Type: CAZyme
Location: 6557 - 8773 (-)
Gene ID: HRGMv2_0383_97_8
Type: peptidase
Location: 8922 - 9722 (+)
Type: peptidase
Location: 8922 - 9722 (+)
Gene ID: HRGMv2_0383_97_9
Type: CAZyme
Location: 9848 - 12649 (+)
Type: CAZyme
Location: 9848 - 12649 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola caecigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.