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Genome Details

Selected Rep_genome_ID: HRGMv2_0329
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Muribaculaceae
→
Genus
Limisoma
→
Species
Limisoma sp900544305
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
C124.bin_25 3,336,904 97.74% 0.88% China(Inner Mongolia) Asia IMGG
CGMR089820 2,887,187 95.66% 0.57% China Asia CGMR
HRGMv2_0329 3,181,166 98.2% 0.503% South Korea Asia HRGM
MGYG000000568 2,842,092 96.09% 0.38% China Asia UHGG
Rep_282 3,305,051 98.1132% 1.79245% NA NA WIS
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0329_CGC4 CGCFAM_00001 Yes 13 6 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0329_CGC26 CGCFAM_00023 Yes 4 1
HRGMv2_0329_CGC39 CGCFAM_00043 Yes 6 2 alpha-glucan
HRGMv2_0329_CGC18 CGCFAM_00110 Yes 9 5 pectin/host glycan
HRGMv2_0329_CGC31 CGCFAM_00145 Yes 9 4
HRGMv2_0329_CGC20 CGCFAM_00165 Yes 4 1
HRGMv2_0329_CGC38 CGCFAM_00266 Yes 4 1
HRGMv2_0329_CGC16 CGCFAM_00275 Yes 14 5
HRGMv2_0329_CGC13 CGCFAM_00288 Yes 3 1
HRGMv2_0329_CGC36 CGCFAM_00349 Yes 4 1
HRGMv2_0329_CGC24 CGCFAM_00713 Yes 3 1
HRGMv2_0329_CGC37 CGCFAM_00724 Yes 4 2 xylan
HRGMv2_0329_CGC25 CGCFAM_00791 Yes 3 2
HRGMv2_0329_CGC11 CGCFAM_00873 Yes 6 1
HRGMv2_0329_CGC17 CGCFAM_01330 Yes 8 3
HRGMv2_0329_CGC21 CGCFAM_01592 Yes 5 3
HRGMv2_0329_CGC5 CGCFAM_02476 Yes 7 2
HRGMv2_0329_CGC1 CGCFAM_02604 Yes 6 1
HRGMv2_0329_CGC27 CGCFAM_02779 Yes 4 1
HRGMv2_0329_CGC33 CGCFAM_02866 Yes 8 1
HRGMv2_0329_CGC6 CGCFAM_04566 Yes 4 1
HRGMv2_0329_CGC23 CGCFAM_05986 Yes 10 1
HRGMv2_0329_CGC10 CGCFAM_06549 Yes 4 2
HRGMv2_0329_CGC15 CGCFAM_08082 Yes 11 4
HRGMv2_0329_CGC2 CGCFAM_08869 Yes 4 1
Top CAZyme Families