Cluster: HRGMv2_0329_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0329
- CGC Family ID: CGCFAM_00001
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0329_1 | HRGMv2_0329_1_69 | 81699 | 82928 | - | GH5_46 |
| CAZyme | HRGMv2_0329_1 | HRGMv2_0329_1_70 | 82940 | 85249 | - | GH3 |
| pfam | HRGMv2_0329_1 | HRGMv2_0329_1_71 | 85321 | 86868 | - | LRR_5 | LRR_5 | Por_Secre_tail |
| NULL(UNKNOWN) | HRGMv2_0329_1 | HRGMv2_0329_1_72 | 86924 | 88486 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0329_1 | HRGMv2_0329_1_73 | 88543 | 89748 | - | GH16_3 |
| pfam | HRGMv2_0329_1 | HRGMv2_0329_1_74 | 89758 | 90210 | - | Por_Secre_tail |
| NULL(UNKNOWN) | HRGMv2_0329_1 | HRGMv2_0329_1_75 | 90223 | 90708 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0329_1 | HRGMv2_0329_1_76 | 90882 | 91700 | - | GH16_3 |
| TF | HRGMv2_0329_1 | HRGMv2_0329_1_77 | 91916 | 95941 | - | HTH_AraC |
| TC | HRGMv2_0329_1 | HRGMv2_0329_1_78 | 96221 | 99385 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0329_1 | HRGMv2_0329_1_79 | 99407 | 101068 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0329_1 | HRGMv2_0329_1_80 | 101084 | 102193 | + | GH26 |
| CAZyme | HRGMv2_0329_1 | HRGMv2_0329_1_81 | 102203 | 104395 | + | GH3 |
Gene ID: HRGMv2_0329_1_69
Type: CAZyme
Location: 81699 - 82928 (-)
Type: CAZyme
Location: 81699 - 82928 (-)
Gene ID: HRGMv2_0329_1_70
Type: CAZyme
Location: 82940 - 85249 (-)
Type: CAZyme
Location: 82940 - 85249 (-)
Gene ID: HRGMv2_0329_1_71
Type: pfam
Location: 85321 - 86868 (-)
Type: pfam
Location: 85321 - 86868 (-)
Gene ID: HRGMv2_0329_1_72
Type:
Location: 86924 - 88486 (-)
Type:
Location: 86924 - 88486 (-)
Gene ID: HRGMv2_0329_1_73
Type: CAZyme
Location: 88543 - 89748 (-)
Type: CAZyme
Location: 88543 - 89748 (-)
Gene ID: HRGMv2_0329_1_74
Type: pfam
Location: 89758 - 90210 (-)
Type: pfam
Location: 89758 - 90210 (-)
Gene ID: HRGMv2_0329_1_75
Type:
Location: 90223 - 90708 (-)
Type:
Location: 90223 - 90708 (-)
Gene ID: HRGMv2_0329_1_76
Type: CAZyme
Location: 90882 - 91700 (-)
Type: CAZyme
Location: 90882 - 91700 (-)
Gene ID: HRGMv2_0329_1_77
Type: TF
Location: 91916 - 95941 (-)
Type: TF
Location: 91916 - 95941 (-)
Gene ID: HRGMv2_0329_1_78
Type: TC
Location: 96221 - 99385 (+)
Type: TC
Location: 96221 - 99385 (+)
Gene ID: HRGMv2_0329_1_79
Type: pfam
Location: 99407 - 101068 (+)
Type: pfam
Location: 99407 - 101068 (+)
Gene ID: HRGMv2_0329_1_80
Type: CAZyme
Location: 101084 - 102193 (+)
Type: CAZyme
Location: 101084 - 102193 (+)
Gene ID: HRGMv2_0329_1_81
Type: CAZyme
Location: 102203 - 104395 (+)
Type: CAZyme
Location: 102203 - 104395 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Limisoma
Species
Limisoma sp900544305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.