Cluster: HRGMv2_0329_CGC16
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0329
- CGC Family ID: CGCFAM_00275
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0329_8 | HRGMv2_0329_8_10 | 13701 | 16766 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0329_8 | HRGMv2_0329_8_11 | 16793 | 18310 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0329_8 | HRGMv2_0329_8_12 | 18335 | 20437 | + | CBM32 | GH43_28 |
| CAZyme | HRGMv2_0329_8 | HRGMv2_0329_8_13 | 20465 | 21841 | + | GH144 |
| CAZyme | HRGMv2_0329_8 | HRGMv2_0329_8_14 | 21855 | 24137 | + | GH3 |
| CAZyme | HRGMv2_0329_8 | HRGMv2_0329_8_15 | 24375 | 26723 | + | GH133 |
| CAZyme | HRGMv2_0329_8 | HRGMv2_0329_8_16 | 26725 | 27909 | + | CE1 |
| TC | HRGMv2_0329_8 | HRGMv2_0329_8_17 | 28262 | 28942 | + | 2.A.88.8.1 |
| pfam | HRGMv2_0329_8 | HRGMv2_0329_8_18 | 28975 | 29676 | + | Hydrolase | Hydrolase_like | HAD_2 |
| pfam | HRGMv2_0329_8 | HRGMv2_0329_8_19 | 29696 | 30292 | - | UPF0029 |
| TC | HRGMv2_0329_8 | HRGMv2_0329_8_20 | 30356 | 30982 | - | 2.A.124.1.4 |
| pfam | HRGMv2_0329_8 | HRGMv2_0329_8_21 | 30979 | 31257 | - | Lys_export |
| pfam | HRGMv2_0329_8 | HRGMv2_0329_8_22 | 31385 | 32530 | - | Cyt_bd_oxida_II |
| TC | HRGMv2_0329_8 | HRGMv2_0329_8_23 | 32535 | 34112 | - | 3.D.4.3.2 |
Gene ID: HRGMv2_0329_8_10
Type: TC
Location: 13701 - 16766 (+)
Type: TC
Location: 13701 - 16766 (+)
Gene ID: HRGMv2_0329_8_11
Type: pfam
Location: 16793 - 18310 (+)
Type: pfam
Location: 16793 - 18310 (+)
Gene ID: HRGMv2_0329_8_12
Type: CAZyme
Location: 18335 - 20437 (+)
Type: CAZyme
Location: 18335 - 20437 (+)
Gene ID: HRGMv2_0329_8_13
Type: CAZyme
Location: 20465 - 21841 (+)
Type: CAZyme
Location: 20465 - 21841 (+)
Gene ID: HRGMv2_0329_8_14
Type: CAZyme
Location: 21855 - 24137 (+)
Type: CAZyme
Location: 21855 - 24137 (+)
Gene ID: HRGMv2_0329_8_15
Type: CAZyme
Location: 24375 - 26723 (+)
Type: CAZyme
Location: 24375 - 26723 (+)
Gene ID: HRGMv2_0329_8_16
Type: CAZyme
Location: 26725 - 27909 (+)
Type: CAZyme
Location: 26725 - 27909 (+)
Gene ID: HRGMv2_0329_8_17
Type: TC
Location: 28262 - 28942 (+)
Type: TC
Location: 28262 - 28942 (+)
Gene ID: HRGMv2_0329_8_18
Type: pfam
Location: 28975 - 29676 (+)
Type: pfam
Location: 28975 - 29676 (+)
Gene ID: HRGMv2_0329_8_19
Type: pfam
Location: 29696 - 30292 (-)
Type: pfam
Location: 29696 - 30292 (-)
Gene ID: HRGMv2_0329_8_20
Type: TC
Location: 30356 - 30982 (-)
Type: TC
Location: 30356 - 30982 (-)
Gene ID: HRGMv2_0329_8_21
Type: pfam
Location: 30979 - 31257 (-)
Type: pfam
Location: 30979 - 31257 (-)
Gene ID: HRGMv2_0329_8_22
Type: pfam
Location: 31385 - 32530 (-)
Type: pfam
Location: 31385 - 32530 (-)
Gene ID: HRGMv2_0329_8_23
Type: TC
Location: 32535 - 34112 (-)
Type: TC
Location: 32535 - 34112 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Limisoma
Species
Limisoma sp900544305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.