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Genome Details

Selected Rep_genome_ID: HRGMv2_0072
Total Genomes Found: 12
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Actinomycetota
→
Class
Actinomycetia
→
Order
Actinomycetales
→
Family
Bifidobacteriaceae
→
Genus
Bifidobacterium
→
Species
Bifidobacterium sp002742445
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
AG465_3 2,102,676 100% 0.45% NA Africa H3AfricaPhase2
HRGMv2_0072 2,003,950 99.77% 0% India Asia HRGM
MGYG000000756 1,963,853 98.96% 0.15% Bangladesh Asia UHGG
REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_J_15_1254.16 2,150,773 99.55% 0.15% NA Africa Hadza
SPMP106_bin.57 2,203,007 94.8% 3.79% Singapore Asia SPMP
SPMP108_bin.15 1,774,116 93.64% 0.91% Singapore Asia SPMP
SPMP23_bin.45 2,003,124 98.41% 3.18% Singapore Asia SPMP
SPMP29_bin.45 1,972,413 94.04% 2.5% Singapore Asia SPMP
SPMP42_bin.45 1,966,740 94.34% 0.45% Singapore Asia SPMP
SPMP50_bin.66 1,815,999 90.56% 3.07% Singapore Asia SPMP
SPMP73_bin.40 1,866,413 93.9% 2.42% Singapore Asia SPMP
SPMP78_bin.95 1,989,725 99.72% 0.76% Singapore Asia SPMP
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0072_CGC13 CGCFAM_00936 Yes 11 7 arabinogalactan/xylan
HRGMv2_0072_CGC23 CGCFAM_01196 Yes 3 1
HRGMv2_0072_CGC28 CGCFAM_01326 Yes 12 2
HRGMv2_0072_CGC14 CGCFAM_01691 Yes 4 1
HRGMv2_0072_CGC5 CGCFAM_02433 Yes 4 1
HRGMv2_0072_CGC21 CGCFAM_02434 Yes 9 2
HRGMv2_0072_CGC15 CGCFAM_03417 Yes 37 7
HRGMv2_0072_CGC17 CGCFAM_03706 Yes 4 2
PUL0214_HRGMv2_0072_C0 CGCFAM_04146 Yes 8 2 galactan
HRGMv2_0072_CGC10 CGCFAM_05119 Yes 37 1
HRGMv2_0072_CGC25 CGCFAM_05120 Yes 15 2
HRGMv2_0072_CGC26 CGCFAM_05936 Yes 5 1
HRGMv2_0072_CGC1 CGCFAM_06800 Yes 12 4
HRGMv2_0072_CGC27 CGCFAM_09484 Yes 6 1
Top CAZyme Families