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Cluster: HRGMv2_0072_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0072_1 HRGMv2_0072_1_22 29325 30524 + GH5_44
STP HRGMv2_0072_1 HRGMv2_0072_1_23 30632 31207 + TetR_N
CAZyme HRGMv2_0072_1 HRGMv2_0072_1_24 31385 33727 + GH3
TC HRGMv2_0072_1 HRGMv2_0072_1_25 34023 35522 + 2.A.1.3.30
CAZyme HRGMv2_0072_1 HRGMv2_0072_1_26 35547 37076 + GH78
TC HRGMv2_0072_1 HRGMv2_0072_1_27 37256 38560 + 2.A.1.2.93
pfam HRGMv2_0072_1 HRGMv2_0072_1_28 38547 39728 - Gly_kinase
STP HRGMv2_0072_1 HRGMv2_0072_1_29 39784 40362 - TetR_N
CAZyme HRGMv2_0072_1 HRGMv2_0072_1_30 40615 42861 + GH3
TF HRGMv2_0072_1 HRGMv2_0072_1_31 43055 43777 + MarR
TC HRGMv2_0072_1 HRGMv2_0072_1_32 43818 45629 + 3.A.1.135.5
TC HRGMv2_0072_1 HRGMv2_0072_1_33 45643 47691 + 3.A.1.135.8
Gene ID: HRGMv2_0072_1_22
Type: CAZyme
Location: 29325 - 30524 (+)
Gene ID: HRGMv2_0072_1_23
Type: STP
Location: 30632 - 31207 (+)
Gene ID: HRGMv2_0072_1_24
Type: CAZyme
Location: 31385 - 33727 (+)
Gene ID: HRGMv2_0072_1_25
Type: TC
Location: 34023 - 35522 (+)
Gene ID: HRGMv2_0072_1_26
Type: CAZyme
Location: 35547 - 37076 (+)
Gene ID: HRGMv2_0072_1_27
Type: TC
Location: 37256 - 38560 (+)
Gene ID: HRGMv2_0072_1_28
Type: pfam
Location: 38547 - 39728 (-)
Gene ID: HRGMv2_0072_1_29
Type: STP
Location: 39784 - 40362 (-)
Gene ID: HRGMv2_0072_1_30
Type: CAZyme
Location: 40615 - 42861 (+)
Gene ID: HRGMv2_0072_1_31
Type: TF
Location: 43055 - 43777 (+)
Gene ID: HRGMv2_0072_1_32
Type: TC
Location: 43818 - 45629 (+)
Gene ID: HRGMv2_0072_1_33
Type: TC
Location: 45643 - 47691 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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