Cluster: HRGMv2_0072_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 7
- Substrate: arabinogalactan/xylan
- Genome ID: HRGMv2_0072
- CGC Family ID: CGCFAM_00936
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0072_2 | HRGMv2_0072_2_226 | 262267 | 264579 | + | GT51 |
| CAZyme | HRGMv2_0072_2 | HRGMv2_0072_2_227 | 264757 | 265815 | - | GH43_22 |
| CAZyme | HRGMv2_0072_2 | HRGMv2_0072_2_228 | 265853 | 268375 | - | GH146 |
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_229 | 268567 | 269475 | - | 3.A.1.1.36 |
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_230 | 269472 | 270419 | - | 3.A.1.1.36 |
| STP | HRGMv2_0072_2 | HRGMv2_0072_2_231 | 270569 | 271885 | - | SBP_bac_1 |
| CAZyme | HRGMv2_0072_2 | HRGMv2_0072_2_232 | 272139 | 273155 | - | GH43_26 |
| TF | HRGMv2_0072_2 | HRGMv2_0072_2_233 | 273423 | 274499 | - | LacI |
| CAZyme | HRGMv2_0072_2 | HRGMv2_0072_2_234 | 274583 | 276712 | - | GH43_27 |
| CAZyme | HRGMv2_0072_2 | HRGMv2_0072_2_235 | 276813 | 278408 | + | GH43_4 |
| CAZyme | HRGMv2_0072_2 | HRGMv2_0072_2_236 | 278405 | 280078 | + | GH43_4 |
Gene ID: HRGMv2_0072_2_226
Type: CAZyme
Location: 262267 - 264579 (+)
Type: CAZyme
Location: 262267 - 264579 (+)
Gene ID: HRGMv2_0072_2_227
Type: CAZyme
Location: 264757 - 265815 (-)
Type: CAZyme
Location: 264757 - 265815 (-)
Gene ID: HRGMv2_0072_2_228
Type: CAZyme
Location: 265853 - 268375 (-)
Type: CAZyme
Location: 265853 - 268375 (-)
Gene ID: HRGMv2_0072_2_229
Type: TC
Location: 268567 - 269475 (-)
Type: TC
Location: 268567 - 269475 (-)
Gene ID: HRGMv2_0072_2_230
Type: TC
Location: 269472 - 270419 (-)
Type: TC
Location: 269472 - 270419 (-)
Gene ID: HRGMv2_0072_2_231
Type: STP
Location: 270569 - 271885 (-)
Type: STP
Location: 270569 - 271885 (-)
Gene ID: HRGMv2_0072_2_232
Type: CAZyme
Location: 272139 - 273155 (-)
Type: CAZyme
Location: 272139 - 273155 (-)
Gene ID: HRGMv2_0072_2_233
Type: TF
Location: 273423 - 274499 (-)
Type: TF
Location: 273423 - 274499 (-)
Gene ID: HRGMv2_0072_2_234
Type: CAZyme
Location: 274583 - 276712 (-)
Type: CAZyme
Location: 274583 - 276712 (-)
Gene ID: HRGMv2_0072_2_235
Type: CAZyme
Location: 276813 - 278408 (+)
Type: CAZyme
Location: 276813 - 278408 (+)
Gene ID: HRGMv2_0072_2_236
Type: CAZyme
Location: 278405 - 280078 (+)
Type: CAZyme
Location: 278405 - 280078 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium sp002742445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0072_2_226 | vegetarian > omnivore | 1.17881 | 0.00609 |
| HRGMv2_0072_2_230 | vegan > omnivore | 1.05072 | 0.00565 |
| HRGMv2_0072_2_231 | vegan > omnivore | 1.00639 | 0.00565 |
| HRGMv2_0072_2_236 | vegan > omnivore | 3.16769 | 0.00565 |
| HRGMv2_0072_2_236 | vegetarian > omnivore | 2.88471 | 0.00609 |