Cluster: HRGMv2_0072_CGC27
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0072
- CGC Family ID: CGCFAM_09484
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0072_6 | HRGMv2_0072_6_16 | 15201 | 17630 | + | GH3 |
| pfam | HRGMv2_0072_6 | HRGMv2_0072_6_17 | 17623 | 18180 | + | GtrA_DPMS_TM |
| TC | HRGMv2_0072_6 | HRGMv2_0072_6_18 | 18436 | 19773 | + | 2.A.49.9.3 |
| pfam | HRGMv2_0072_6 | HRGMv2_0072_6_19 | 20007 | 21443 | - | HATPase_c_5 |
| TF | HRGMv2_0072_6 | HRGMv2_0072_6_20 | 21440 | 22156 | - | LytTR |
| TC | HRGMv2_0072_6 | HRGMv2_0072_6_21 | 22475 | 23602 | + | 3.A.1.1.23 |
Gene ID: HRGMv2_0072_6_16
Type: CAZyme
Location: 15201 - 17630 (+)
Type: CAZyme
Location: 15201 - 17630 (+)
Gene ID: HRGMv2_0072_6_17
Type: pfam
Location: 17623 - 18180 (+)
Type: pfam
Location: 17623 - 18180 (+)
Gene ID: HRGMv2_0072_6_18
Type: TC
Location: 18436 - 19773 (+)
Type: TC
Location: 18436 - 19773 (+)
Gene ID: HRGMv2_0072_6_19
Type: pfam
Location: 20007 - 21443 (-)
Type: pfam
Location: 20007 - 21443 (-)
Gene ID: HRGMv2_0072_6_20
Type: TF
Location: 21440 - 22156 (-)
Type: TF
Location: 21440 - 22156 (-)
Gene ID: HRGMv2_0072_6_21
Type: TC
Location: 22475 - 23602 (+)
Type: TC
Location: 22475 - 23602 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium sp002742445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.