Cluster: PUL0214_HRGMv2_0072_C0
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate: galactan
- Genome ID: HRGMv2_0072
- CGC Family ID: CGCFAM_04146
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TF | PUL0214_HRGMv2_0072_C0 | HRGMv2_0072_3_35 | 40138 | 41211 | - | LacI |
| CAZyme | PUL0214_HRGMv2_0072_C0 | HRGMv2_0072_3_36 | 41256 | 43358 | - | GH42 |
| CAZyme | PUL0214_HRGMv2_0072_C0 | HRGMv2_0072_3_37 | 43414 | 45669 | - | GH35 |
| TC | PUL0214_HRGMv2_0072_C0 | HRGMv2_0072_3_38 | 45711 | 46544 | - | 3.A.1.1.39 |
| TC | PUL0214_HRGMv2_0072_C0 | HRGMv2_0072_3_39 | 46541 | 47503 | - | 3.A.1.1.20 |
| STP | PUL0214_HRGMv2_0072_C0 | HRGMv2_0072_3_40 | 47605 | 48855 | - | SBP_bac_1 |
| peptidase | PUL0214_HRGMv2_0072_C0 | HRGMv2_0072_3_41 | 49434 | 50141 | - | C26.A32 |
| pfam | PUL0214_HRGMv2_0072_C0 | HRGMv2_0072_3_42 | 50255 | 51130 | - | SOR_SNZ | ThiG |
Gene ID: HRGMv2_0072_3_35
Type: TF
Location: 40138 - 41211 (-)
Type: TF
Location: 40138 - 41211 (-)
Gene ID: HRGMv2_0072_3_36
Type: CAZyme
Location: 41256 - 43358 (-)
Type: CAZyme
Location: 41256 - 43358 (-)
Gene ID: HRGMv2_0072_3_37
Type: CAZyme
Location: 43414 - 45669 (-)
Type: CAZyme
Location: 43414 - 45669 (-)
Gene ID: HRGMv2_0072_3_38
Type: TC
Location: 45711 - 46544 (-)
Type: TC
Location: 45711 - 46544 (-)
Gene ID: HRGMv2_0072_3_39
Type: TC
Location: 46541 - 47503 (-)
Type: TC
Location: 46541 - 47503 (-)
Gene ID: HRGMv2_0072_3_40
Type: STP
Location: 47605 - 48855 (-)
Type: STP
Location: 47605 - 48855 (-)
Gene ID: HRGMv2_0072_3_41
Type: peptidase
Location: 49434 - 50141 (-)
Type: peptidase
Location: 49434 - 50141 (-)
Gene ID: HRGMv2_0072_3_42
Type: pfam
Location: 50255 - 51130 (-)
Type: pfam
Location: 50255 - 51130 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium sp002742445
Gene Composition
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