Cluster: HRGMv2_0072_CGC15
🧬 Cluster Details
- Gene Count: 37
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_0072
- CGC Family ID: CGCFAM_03417
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_303 | 366604 | 368073 | + | 2.A.3.1.3 |
| NULL(UNKNOWN) | HRGMv2_0072_2 | HRGMv2_0072_2_304 | 368347 | 369096 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0072_2 | HRGMv2_0072_2_305 | 369294 | 371495 | - | GH36 |
| pfam | HRGMv2_0072_2 | HRGMv2_0072_2_306 | 371667 | 372287 | + | DUF624 |
| TF | HRGMv2_0072_2 | HRGMv2_0072_2_307 | 372336 | 373379 | - | LacI |
| CAZyme | HRGMv2_0072_2 | HRGMv2_0072_2_308 | 373608 | 376340 | - | GH2 |
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_309 | 376506 | 377396 | - | 3.A.1.1.18 |
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_310 | 377396 | 378457 | - | 3.A.1.1.20 |
| STP | HRGMv2_0072_2 | HRGMv2_0072_2_311 | 378585 | 379964 | - | SBP_bac_1 |
| CAZyme | HRGMv2_0072_2 | HRGMv2_0072_2_312 | 380451 | 381818 | - | GH1 |
| pfam | HRGMv2_0072_2 | HRGMv2_0072_2_313 | 381934 | 383301 | - | AAA_14 | DUF4143 |
| CAZyme | HRGMv2_0072_2 | HRGMv2_0072_2_314 | 383760 | 384944 | + | CE2 |
| CAZyme | HRGMv2_0072_2 | HRGMv2_0072_2_315 | 385178 | 386995 | - | CE20 |
| pfam | HRGMv2_0072_2 | HRGMv2_0072_2_316 | 387270 | 388310 | + | KARI_C | 2-Hacid_dh_C | NAD_binding_2 | F420_oxidored | KARI_N |
| pfam | HRGMv2_0072_2 | HRGMv2_0072_2_317 | 388769 | 389821 | - | KARI_C | 2-Hacid_dh_C | NAD_binding_2 | F420_oxidored | KARI_N |
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_318 | 390111 | 391460 | - | 2.A.1.6.10 |
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_319 | 391912 | 393513 | - | 2.A.1.2.93 |
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_320 | 393845 | 394702 | - | 3.A.1.1.45 |
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_321 | 394702 | 395580 | - | 3.A.1.1.45 |
| pfam | HRGMv2_0072_2 | HRGMv2_0072_2_322 | 395666 | 396952 | - | SBP_bac_1 | SBP_bac_8 |
| CAZyme | HRGMv2_0072_2 | HRGMv2_0072_2_323 | 397291 | 399192 | + | GH13_44 |
| pfam | HRGMv2_0072_2 | HRGMv2_0072_2_324 | 399308 | 399964 | - | DUF624 |
| CAZyme | HRGMv2_0072_2 | HRGMv2_0072_2_325 | 400153 | 401667 | - | GH13_18 |
| TF | HRGMv2_0072_2 | HRGMv2_0072_2_326 | 402057 | 403142 | - | LacI |
| pfam | HRGMv2_0072_2 | HRGMv2_0072_2_327 | 403683 | 404075 | - | CRCB |
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_328 | 404075 | 405199 | - | 1.A.43.3.1 |
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_329 | 405468 | 407042 | - | 2.A.49.5.5 |
| pfam | HRGMv2_0072_2 | HRGMv2_0072_2_330 | 407304 | 408590 | - | Adenylsucc_synt |
| pfam | HRGMv2_0072_2 | HRGMv2_0072_2_331 | 408801 | 409904 | - | F_bP_aldolase |
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_332 | 410177 | 412888 | + | 9.B.74.1.1 |
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_333 | 412885 | 415206 | + | 9.B.74.1.1 |
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_334 | 415508 | 416533 | - | 2.A.7.17.1 |
| peptidase | HRGMv2_0072_2 | HRGMv2_0072_2_335 | 417222 | 418328 | - | M48.UPB |
| STP | HRGMv2_0072_2 | HRGMv2_0072_2_336 | 418616 | 420136 | - | Pyr_redox_2 |
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_337 | 420532 | 422031 | + | 2.A.3.1.8 |
| pfam | HRGMv2_0072_2 | HRGMv2_0072_2_338 | 422250 | 423260 | + | Asparaginase | Asparaginase_C |
| TC | HRGMv2_0072_2 | HRGMv2_0072_2_339 | 423437 | 425872 | - | 3.A.3.25.3 |
Gene ID: HRGMv2_0072_2_303
Type: TC
Location: 366604 - 368073 (+)
Type: TC
Location: 366604 - 368073 (+)
Gene ID: HRGMv2_0072_2_304
Type:
Location: 368347 - 369096 (+)
Type:
Location: 368347 - 369096 (+)
Gene ID: HRGMv2_0072_2_305
Type: CAZyme
Location: 369294 - 371495 (-)
Type: CAZyme
Location: 369294 - 371495 (-)
Gene ID: HRGMv2_0072_2_306
Type: pfam
Location: 371667 - 372287 (+)
Type: pfam
Location: 371667 - 372287 (+)
Gene ID: HRGMv2_0072_2_307
Type: TF
Location: 372336 - 373379 (-)
Type: TF
Location: 372336 - 373379 (-)
Gene ID: HRGMv2_0072_2_308
Type: CAZyme
Location: 373608 - 376340 (-)
Type: CAZyme
Location: 373608 - 376340 (-)
Gene ID: HRGMv2_0072_2_309
Type: TC
Location: 376506 - 377396 (-)
Type: TC
Location: 376506 - 377396 (-)
Gene ID: HRGMv2_0072_2_310
Type: TC
Location: 377396 - 378457 (-)
Type: TC
Location: 377396 - 378457 (-)
Gene ID: HRGMv2_0072_2_311
Type: STP
Location: 378585 - 379964 (-)
Type: STP
Location: 378585 - 379964 (-)
Gene ID: HRGMv2_0072_2_312
Type: CAZyme
Location: 380451 - 381818 (-)
Type: CAZyme
Location: 380451 - 381818 (-)
Gene ID: HRGMv2_0072_2_313
Type: pfam
Location: 381934 - 383301 (-)
Type: pfam
Location: 381934 - 383301 (-)
Gene ID: HRGMv2_0072_2_314
Type: CAZyme
Location: 383760 - 384944 (+)
Type: CAZyme
Location: 383760 - 384944 (+)
Gene ID: HRGMv2_0072_2_315
Type: CAZyme
Location: 385178 - 386995 (-)
Type: CAZyme
Location: 385178 - 386995 (-)
Gene ID: HRGMv2_0072_2_316
Type: pfam
Location: 387270 - 388310 (+)
Type: pfam
Location: 387270 - 388310 (+)
Gene ID: HRGMv2_0072_2_317
Type: pfam
Location: 388769 - 389821 (-)
Type: pfam
Location: 388769 - 389821 (-)
Gene ID: HRGMv2_0072_2_318
Type: TC
Location: 390111 - 391460 (-)
Type: TC
Location: 390111 - 391460 (-)
Gene ID: HRGMv2_0072_2_319
Type: TC
Location: 391912 - 393513 (-)
Type: TC
Location: 391912 - 393513 (-)
Gene ID: HRGMv2_0072_2_320
Type: TC
Location: 393845 - 394702 (-)
Type: TC
Location: 393845 - 394702 (-)
Gene ID: HRGMv2_0072_2_321
Type: TC
Location: 394702 - 395580 (-)
Type: TC
Location: 394702 - 395580 (-)
Gene ID: HRGMv2_0072_2_322
Type: pfam
Location: 395666 - 396952 (-)
Type: pfam
Location: 395666 - 396952 (-)
Gene ID: HRGMv2_0072_2_323
Type: CAZyme
Location: 397291 - 399192 (+)
Type: CAZyme
Location: 397291 - 399192 (+)
Gene ID: HRGMv2_0072_2_324
Type: pfam
Location: 399308 - 399964 (-)
Type: pfam
Location: 399308 - 399964 (-)
Gene ID: HRGMv2_0072_2_325
Type: CAZyme
Location: 400153 - 401667 (-)
Type: CAZyme
Location: 400153 - 401667 (-)
Gene ID: HRGMv2_0072_2_326
Type: TF
Location: 402057 - 403142 (-)
Type: TF
Location: 402057 - 403142 (-)
Gene ID: HRGMv2_0072_2_327
Type: pfam
Location: 403683 - 404075 (-)
Type: pfam
Location: 403683 - 404075 (-)
Gene ID: HRGMv2_0072_2_328
Type: TC
Location: 404075 - 405199 (-)
Type: TC
Location: 404075 - 405199 (-)
Gene ID: HRGMv2_0072_2_329
Type: TC
Location: 405468 - 407042 (-)
Type: TC
Location: 405468 - 407042 (-)
Gene ID: HRGMv2_0072_2_330
Type: pfam
Location: 407304 - 408590 (-)
Type: pfam
Location: 407304 - 408590 (-)
Gene ID: HRGMv2_0072_2_331
Type: pfam
Location: 408801 - 409904 (-)
Type: pfam
Location: 408801 - 409904 (-)
Gene ID: HRGMv2_0072_2_332
Type: TC
Location: 410177 - 412888 (+)
Type: TC
Location: 410177 - 412888 (+)
Gene ID: HRGMv2_0072_2_333
Type: TC
Location: 412885 - 415206 (+)
Type: TC
Location: 412885 - 415206 (+)
Gene ID: HRGMv2_0072_2_334
Type: TC
Location: 415508 - 416533 (-)
Type: TC
Location: 415508 - 416533 (-)
Gene ID: HRGMv2_0072_2_335
Type: peptidase
Location: 417222 - 418328 (-)
Type: peptidase
Location: 417222 - 418328 (-)
Gene ID: HRGMv2_0072_2_336
Type: STP
Location: 418616 - 420136 (-)
Type: STP
Location: 418616 - 420136 (-)
Gene ID: HRGMv2_0072_2_337
Type: TC
Location: 420532 - 422031 (+)
Type: TC
Location: 420532 - 422031 (+)
Gene ID: HRGMv2_0072_2_338
Type: pfam
Location: 422250 - 423260 (+)
Type: pfam
Location: 422250 - 423260 (+)
Gene ID: HRGMv2_0072_2_339
Type: TC
Location: 423437 - 425872 (-)
Type: TC
Location: 423437 - 425872 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium sp002742445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0072_2_307 | vegan > omnivore | 1.20362 | 0.00565 |
| HRGMv2_0072_2_320 | vegetarian > omnivore | 1.14701 | 0.00609 |