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Cluster: HRGMv2_0072_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0072_1 HRGMv2_0072_1_819 957842 958501 - 3.A.1.24.5
TC HRGMv2_0072_1 HRGMv2_0072_1_820 958507 959568 - 3.A.1.24.1
TC HRGMv2_0072_1 HRGMv2_0072_1_821 959698 960570 - 3.A.1.24.5
pfam HRGMv2_0072_1 HRGMv2_0072_1_822 960659 961669 - ApbA | ApbA_C
TC HRGMv2_0072_1 HRGMv2_0072_1_823 961912 962817 - 3.A.1.3.27
TC HRGMv2_0072_1 HRGMv2_0072_1_824 962899 963735 - 3.A.1.3.9
TC HRGMv2_0072_1 HRGMv2_0072_1_825 963728 964402 - 3.A.1.3.2
TC HRGMv2_0072_1 HRGMv2_0072_1_826 964389 965045 - 3.A.1.3.10
pfam HRGMv2_0072_1 HRGMv2_0072_1_827 965313 965927 + Acetyltransf_1
sulfatase HRGMv2_0072_1 HRGMv2_0072_1_828 966376 968391 - S1_97
TC HRGMv2_0072_1 HRGMv2_0072_1_829 968701 969897 - 2.A.45.2.6
pfam HRGMv2_0072_1 HRGMv2_0072_1_830 970283 972367 - Toprim | Zn_ribbon_DnaG | DNAG_N | DnaB_bind | Toprim_2 | Toprim_4
pfam HRGMv2_0072_1 HRGMv2_0072_1_831 972473 973966 - Ala_racemase_C | Ala_racemase_N
TC HRGMv2_0072_1 HRGMv2_0072_1_832 974075 975502 + 2.A.3.3.22
NULL(UNKNOWN) HRGMv2_0072_1 HRGMv2_0072_1_833 975700 976236 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0072_1 HRGMv2_0072_1_834 976345 976830 - LuxS
TC HRGMv2_0072_1 HRGMv2_0072_1_835 976997 978943 - 2.A.16.2.2
TC HRGMv2_0072_1 HRGMv2_0072_1_836 978949 981744 - 3.A.1.122.14
pfam HRGMv2_0072_1 HRGMv2_0072_1_837 981962 983143 - DegT_DnrJ_EryC1 | Cys_Met_Meta_PP | Beta_elim_lyase
STP HRGMv2_0072_1 HRGMv2_0072_1_838 983222 984232 - PALP
TC HRGMv2_0072_1 HRGMv2_0072_1_839 984671 985450 - 3.A.1.5.1
TC HRGMv2_0072_1 HRGMv2_0072_1_840 985462 986247 - 3.A.1.5.23
TC HRGMv2_0072_1 HRGMv2_0072_1_841 986244 987164 - 3.A.1.5.3
TC HRGMv2_0072_1 HRGMv2_0072_1_842 987161 988141 - 3.A.1.5.39
TC HRGMv2_0072_1 HRGMv2_0072_1_843 988331 989986 - 3.A.1.5.18
pfam HRGMv2_0072_1 HRGMv2_0072_1_844 990188 991471 + Flavoprotein | DFP
pfam HRGMv2_0072_1 HRGMv2_0072_1_845 991530 992303 + Pan_kinase
TC HRGMv2_0072_1 HRGMv2_0072_1_846 992413 993840 - 3.A.1.1.48
CAZyme HRGMv2_0072_1 HRGMv2_0072_1_847 994046 996115 - GH42
TC HRGMv2_0072_1 HRGMv2_0072_1_848 996287 997579 - 2.A.23.4.1
pfam HRGMv2_0072_1 HRGMv2_0072_1_849 997794 998546 - PseudoU_synth_2
STP HRGMv2_0072_1 HRGMv2_0072_1_850 998558 1000420 - SIS | SIS
TC HRGMv2_0072_1 HRGMv2_0072_1_851 1000643 1001437 - 3.A.1.3.24
TC HRGMv2_0072_1 HRGMv2_0072_1_852 1001450 1002433 - 3.A.1.3.24
TC HRGMv2_0072_1 HRGMv2_0072_1_853 1002479 1003408 - 3.A.1.3.24
pfam HRGMv2_0072_1 HRGMv2_0072_1_854 1003698 1004207 - SBP_bac_3
TC HRGMv2_0072_1 HRGMv2_0072_1_855 1004501 1005448 - 3.A.1.3.24
Gene ID: HRGMv2_0072_1_819
Type: TC
Location: 957842 - 958501 (-)
Gene ID: HRGMv2_0072_1_820
Type: TC
Location: 958507 - 959568 (-)
Gene ID: HRGMv2_0072_1_821
Type: TC
Location: 959698 - 960570 (-)
Gene ID: HRGMv2_0072_1_822
Type: pfam
Location: 960659 - 961669 (-)
Gene ID: HRGMv2_0072_1_823
Type: TC
Location: 961912 - 962817 (-)
Gene ID: HRGMv2_0072_1_824
Type: TC
Location: 962899 - 963735 (-)
Gene ID: HRGMv2_0072_1_825
Type: TC
Location: 963728 - 964402 (-)
Gene ID: HRGMv2_0072_1_826
Type: TC
Location: 964389 - 965045 (-)
Gene ID: HRGMv2_0072_1_827
Type: pfam
Location: 965313 - 965927 (+)
Gene ID: HRGMv2_0072_1_828
Type: sulfatase
Location: 966376 - 968391 (-)
Gene ID: HRGMv2_0072_1_829
Type: TC
Location: 968701 - 969897 (-)
Gene ID: HRGMv2_0072_1_830
Type: pfam
Location: 970283 - 972367 (-)
Gene ID: HRGMv2_0072_1_831
Type: pfam
Location: 972473 - 973966 (-)
Gene ID: HRGMv2_0072_1_832
Type: TC
Location: 974075 - 975502 (+)
Gene ID: HRGMv2_0072_1_833
Type:
Location: 975700 - 976236 (-)
Gene ID: HRGMv2_0072_1_834
Type: pfam
Location: 976345 - 976830 (-)
Gene ID: HRGMv2_0072_1_835
Type: TC
Location: 976997 - 978943 (-)
Gene ID: HRGMv2_0072_1_836
Type: TC
Location: 978949 - 981744 (-)
Gene ID: HRGMv2_0072_1_837
Type: pfam
Location: 981962 - 983143 (-)
Gene ID: HRGMv2_0072_1_838
Type: STP
Location: 983222 - 984232 (-)
Gene ID: HRGMv2_0072_1_839
Type: TC
Location: 984671 - 985450 (-)
Gene ID: HRGMv2_0072_1_840
Type: TC
Location: 985462 - 986247 (-)
Gene ID: HRGMv2_0072_1_841
Type: TC
Location: 986244 - 987164 (-)
Gene ID: HRGMv2_0072_1_842
Type: TC
Location: 987161 - 988141 (-)
Gene ID: HRGMv2_0072_1_843
Type: TC
Location: 988331 - 989986 (-)
Gene ID: HRGMv2_0072_1_844
Type: pfam
Location: 990188 - 991471 (+)
Gene ID: HRGMv2_0072_1_845
Type: pfam
Location: 991530 - 992303 (+)
Gene ID: HRGMv2_0072_1_846
Type: TC
Location: 992413 - 993840 (-)
Gene ID: HRGMv2_0072_1_847
Type: CAZyme
Location: 994046 - 996115 (-)
Gene ID: HRGMv2_0072_1_848
Type: TC
Location: 996287 - 997579 (-)
Gene ID: HRGMv2_0072_1_849
Type: pfam
Location: 997794 - 998546 (-)
Gene ID: HRGMv2_0072_1_850
Type: STP
Location: 998558 - 1000420 (-)
Gene ID: HRGMv2_0072_1_851
Type: TC
Location: 1000643 - 1001437 (-)
Gene ID: HRGMv2_0072_1_852
Type: TC
Location: 1001450 - 1002433 (-)
Gene ID: HRGMv2_0072_1_853
Type: TC
Location: 1002479 - 1003408 (-)
Gene ID: HRGMv2_0072_1_854
Type: pfam
Location: 1003698 - 1004207 (-)
Gene ID: HRGMv2_0072_1_855
Type: TC
Location: 1004501 - 1005448 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0072_1_819 vegan > omnivore 1.56910 0.00565
HRGMv2_0072_1_820 vegan > omnivore 1.20088 0.00565
HRGMv2_0072_1_821 vegan > omnivore 1.87884 0.00565
HRGMv2_0072_1_822 vegan > omnivore 1.80401 0.00565
HRGMv2_0072_1_833 vegan > omnivore 1.03172 0.00565
HRGMv2_0072_1_834 vegetarian > omnivore 1.13003 0.00609
HRGMv2_0072_1_839 vegan > omnivore 1.52907 0.00565
HRGMv2_0072_1_840 vegetarian > omnivore 1.20231 0.00609

🧭 Explore Read Mapping of CGC

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