Cluster: HRGMv2_0072_CGC21
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0072
- CGC Family ID: CGCFAM_02434
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0072_4 | HRGMv2_0072_4_50 | 81114 | 82112 | + | GH23 |
| NULL(UNKNOWN) | HRGMv2_0072_4 | HRGMv2_0072_4_51 | 82297 | 82797 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0072_4 | HRGMv2_0072_4_52 | 82926 | 84581 | - | 9.B.18.1.2 |
| NULL(UNKNOWN) | HRGMv2_0072_4 | HRGMv2_0072_4_53 | 84903 | 85064 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0072_4 | HRGMv2_0072_4_54 | 85328 | 86290 | + | IU_nuc_hydro |
| TC | HRGMv2_0072_4 | HRGMv2_0072_4_55 | 86368 | 87774 | + | 2.A.1.3.22 |
| CAZyme | HRGMv2_0072_4 | HRGMv2_0072_4_56 | 88194 | 90734 | - | GH31_15 |
| TC | HRGMv2_0072_4 | HRGMv2_0072_4_57 | 90747 | 91568 | - | 3.A.1.1.36 |
| TC | HRGMv2_0072_4 | HRGMv2_0072_4_58 | 91565 | 92452 | - | 3.A.1.1.28 |
Gene ID: HRGMv2_0072_4_50
Type: CAZyme
Location: 81114 - 82112 (+)
Type: CAZyme
Location: 81114 - 82112 (+)
Gene ID: HRGMv2_0072_4_51
Type:
Location: 82297 - 82797 (-)
Type:
Location: 82297 - 82797 (-)
Gene ID: HRGMv2_0072_4_52
Type: TC
Location: 82926 - 84581 (-)
Type: TC
Location: 82926 - 84581 (-)
Gene ID: HRGMv2_0072_4_53
Type:
Location: 84903 - 85064 (-)
Type:
Location: 84903 - 85064 (-)
Gene ID: HRGMv2_0072_4_54
Type: pfam
Location: 85328 - 86290 (+)
Type: pfam
Location: 85328 - 86290 (+)
Gene ID: HRGMv2_0072_4_55
Type: TC
Location: 86368 - 87774 (+)
Type: TC
Location: 86368 - 87774 (+)
Gene ID: HRGMv2_0072_4_56
Type: CAZyme
Location: 88194 - 90734 (-)
Type: CAZyme
Location: 88194 - 90734 (-)
Gene ID: HRGMv2_0072_4_57
Type: TC
Location: 90747 - 91568 (-)
Type: TC
Location: 90747 - 91568 (-)
Gene ID: HRGMv2_0072_4_58
Type: TC
Location: 91565 - 92452 (-)
Type: TC
Location: 91565 - 92452 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium sp002742445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0072_4_51 | vegan > omnivore | 1.05074 | 0.00565 |
| HRGMv2_0072_4_51 | vegetarian > omnivore | 1.09187 | 0.00609 |
| HRGMv2_0072_4_52 | vegan > omnivore | 1.40884 | 0.00565 |
| HRGMv2_0072_4_52 | vegetarian > omnivore | 1.09113 | 0.00609 |
| HRGMv2_0072_4_57 | vegan > omnivore | 4.47410 | 0.00565 |
| HRGMv2_0072_4_57 | vegetarian > omnivore | 2.93430 | 0.00609 |
| HRGMv2_0072_4_58 | vegan > omnivore | 16.11759 | 0.00565 |
| HRGMv2_0072_4_58 | vegetarian > omnivore | 14.09426 | 0.00609 |