Genome Details
Selected Rep_genome_ID: CGMR061675
Total Genomes Found: 12
Total Genomes Found: 12
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella biformis
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| C41.CMAG_5 | 2,695,354 | 98.11% | 1.52% | China(Inner Mongolia) | Asia | IMGG |
| CGMR057354 | 2,396,463 | 97.57% | 0.37% | China | Asia | CGMR |
| CGMR061675 | 2,323,497 | 98.25% | 0.13% | China | Asia | CGMR |
| HRGMv2_1893 | 2,103,241 | 97.7% | 0% | Japan | Asia | HRGM |
| KY173_64 | 2,412,386 | 97.84% | 0.84% | NA | Africa | H3AfricaPhase2 |
| Rep_1256 | 2,839,347 | 98.1132% | 1.51617% | NA | NA | WIS |
| SPMP105_bin.45 | 2,320,101 | 98.11% | 2.59% | Singapore | Asia | SPMP |
| SPMP12_bin.82 | 2,497,706 | 98.11% | 1.52% | Singapore | Asia | SPMP |
| SPMP14_bin.13 | 2,449,314 | 97.17% | 2.46% | Singapore | Asia | SPMP |
| SPMP44_bin.9 | 2,593,821 | 98.11% | 1.52% | Singapore | Asia | SPMP |
| SPMP61_bin.41 | 2,667,221 | 93.4% | 3.13% | Singapore | Asia | SPMP |
| SPMP83_bin.102 | 2,700,221 | 94.61% | 2.43% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| CGMR061675_CGC4 | CGCFAM_00092 | Yes | 8 | 1 | |
| CGMR061675_CGC5 | CGCFAM_00102 | Yes | 6 | 1 | |
| CGMR061675_CGC1 | CGCFAM_00578 | Yes | 4 | 1 | |
| CGMR061675_CGC20 | CGCFAM_00851 | Yes | 7 | 1 | |
| CGMR061675_CGC10 | CGCFAM_01247 | Yes | 9 | 1 | |
| CGMR061675_CGC11 | CGCFAM_01785 | Yes | 4 | 1 | |
| CGMR061675_CGC7 | CGCFAM_02226 | Yes | 8 | 2 | |
| CGMR061675_CGC18 | CGCFAM_03140 | Yes | 4 | 1 | |
| CGMR061675_CGC13 | CGCFAM_03561 | Yes | 6 | 2 | |
| CGMR061675_CGC15 | CGCFAM_08807 | Yes | 4 | 1 | |
| CGMR061675_CGC6 | CGCFAM_08808 | Yes | 10 | 1 |
Top CAZyme Families