Cluster: CGMR061675_CGC7
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR061675
- CGC Family ID: CGCFAM_02226
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_27918 | k141_27918_6 | 6925 | 8892 | - | GT4 |
| TC | k141_27918 | k141_27918_7 | 8896 | 9936 | - | 4.D.2.1.5 |
| CAZyme | k141_27918 | k141_27918_8 | 9945 | 11042 | - | GT4 |
| NULL(UNKNOWN) | k141_27918 | k141_27918_9 | 11285 | 11602 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_27918 | k141_27918_10 | 11693 | 12523 | - | 4.A.6.1.16 |
| pfam | k141_27918 | k141_27918_11 | 12526 | 13365 | - | EII-Sor |
| pfam | k141_27918 | k141_27918_12 | 13422 | 13913 | - | PTSIIB_sorb |
| TC | k141_27918 | k141_27918_13 | 13969 | 14397 | - | 4.A.6.1.7 |
Gene ID: k141_27918_6
Type: CAZyme
Location: 6925 - 8892 (-)
Type: CAZyme
Location: 6925 - 8892 (-)
Gene ID: k141_27918_7
Type: TC
Location: 8896 - 9936 (-)
Type: TC
Location: 8896 - 9936 (-)
Gene ID: k141_27918_8
Type: CAZyme
Location: 9945 - 11042 (-)
Type: CAZyme
Location: 9945 - 11042 (-)
Gene ID: k141_27918_9
Type:
Location: 11285 - 11602 (-)
Type:
Location: 11285 - 11602 (-)
Gene ID: k141_27918_10
Type: TC
Location: 11693 - 12523 (-)
Type: TC
Location: 11693 - 12523 (-)
Gene ID: k141_27918_11
Type: pfam
Location: 12526 - 13365 (-)
Type: pfam
Location: 12526 - 13365 (-)
Gene ID: k141_27918_12
Type: pfam
Location: 13422 - 13913 (-)
Type: pfam
Location: 13422 - 13913 (-)
Gene ID: k141_27918_13
Type: TC
Location: 13969 - 14397 (-)
Type: TC
Location: 13969 - 14397 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella biformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_27918_7 | vegan > omnivore | 17.75857 | 0.00457 |
| k141_27918_7 | vegetarian > omnivore | 18.93579 | 0.01188 |
| k141_27918_8 | vegan > omnivore | 4.17373 | 0.00457 |
| k141_27918_8 | vegetarian > omnivore | 4.53880 | 0.01188 |
| k141_27918_9 | vegan > omnivore | 1.97007 | 0.00457 |
| k141_27918_9 | vegetarian > omnivore | 3.02458 | 0.01188 |
| k141_27918_10 | vegan > omnivore | 2.99856 | 0.00457 |
| k141_27918_10 | vegetarian > omnivore | 2.02523 | 0.01188 |
| k141_27918_11 | vegan > omnivore | 4.38283 | 0.00457 |
| k141_27918_11 | vegetarian > omnivore | 5.92598 | 0.01188 |
| k141_27918_12 | vegan > omnivore | 1.10107 | 0.00457 |
| k141_27918_12 | vegetarian > omnivore | 1.84470 | 0.01188 |
| k141_27918_13 | vegan > omnivore | 18.95902 | 0.00457 |
| k141_27918_13 | vegetarian > omnivore | 18.97696 | 0.01188 |