Cluster: CGMR061675_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR061675
- CGC Family ID: CGCFAM_03140
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_163989 | k141_163989_6 | 5580 | 6842 | + | 4.A.3.2.6 |
| TF | k141_163989 | k141_163989_7 | 6853 | 8754 | + | HTH_11 |
| CAZyme | k141_163989 | k141_163989_8 | 8825 | 10153 | + | GH4 |
| TC | k141_163989 | k141_163989_9 | 10169 | 10462 | + | 4.A.3.2.6 |
Gene ID: k141_163989_6
Type: TC
Location: 5580 - 6842 (+)
Type: TC
Location: 5580 - 6842 (+)
Gene ID: k141_163989_7
Type: TF
Location: 6853 - 8754 (+)
Type: TF
Location: 6853 - 8754 (+)
Gene ID: k141_163989_8
Type: CAZyme
Location: 8825 - 10153 (+)
Type: CAZyme
Location: 8825 - 10153 (+)
Gene ID: k141_163989_9
Type: TC
Location: 10169 - 10462 (+)
Type: TC
Location: 10169 - 10462 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella biformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_163989_7 | vegan > omnivore | 3.89160 | 0.00457 |
| k141_163989_7 | vegetarian > omnivore | 4.42894 | 0.01188 |
| k141_163989_9 | vegan > omnivore | 1.18775 | 0.00457 |
| k141_163989_9 | vegetarian > omnivore | 3.15724 | 0.01188 |