Cluster: CGMR061675_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR061675
- CGC Family ID: CGCFAM_00102
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_227204 | k141_227204_119 | 122292 | 123773 | - | GT4 |
| TC | k141_227204 | k141_227204_120 | 123792 | 126101 | - | 3.A.5.10.1 |
| pfam | k141_227204 | k141_227204_121 | 126103 | 126534 | - | Sec-ASP3 |
| TC | k141_227204 | k141_227204_122 | 126524 | 128035 | - | 3.A.5.10.1 |
| TC | k141_227204 | k141_227204_123 | 128022 | 129608 | - | 3.A.5.10.1 |
| TC | k141_227204 | k141_227204_124 | 129621 | 130805 | - | 3.A.5.2.1 |
Gene ID: k141_227204_119
Type: CAZyme
Location: 122292 - 123773 (-)
Type: CAZyme
Location: 122292 - 123773 (-)
Gene ID: k141_227204_120
Type: TC
Location: 123792 - 126101 (-)
Type: TC
Location: 123792 - 126101 (-)
Gene ID: k141_227204_121
Type: pfam
Location: 126103 - 126534 (-)
Type: pfam
Location: 126103 - 126534 (-)
Gene ID: k141_227204_122
Type: TC
Location: 126524 - 128035 (-)
Type: TC
Location: 126524 - 128035 (-)
Gene ID: k141_227204_123
Type: TC
Location: 128022 - 129608 (-)
Type: TC
Location: 128022 - 129608 (-)
Gene ID: k141_227204_124
Type: TC
Location: 129621 - 130805 (-)
Type: TC
Location: 129621 - 130805 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella biformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_227204_119 | vegan > omnivore | 2.01542 | 0.00457 |
| k141_227204_119 | vegetarian > omnivore | 3.07891 | 0.01188 |
| k141_227204_120 | vegan > omnivore | 1.91696 | 0.00457 |
| k141_227204_120 | vegetarian > omnivore | 3.61711 | 0.01188 |
| k141_227204_121 | vegan > omnivore | 2.08340 | 0.00457 |
| k141_227204_121 | vegetarian > omnivore | 4.54565 | 0.01188 |
| k141_227204_124 | vegan > omnivore | 15.53085 | 0.00457 |
| k141_227204_124 | vegetarian > omnivore | 18.15288 | 0.01188 |